Miyakogusa Predicted Gene

Lj0g3v0164299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164299.1 Non Chatacterized Hit- tr|K3YWL7|K3YWL7_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si018663,42.4,2e-17,coiled-coil,NULL,CUFF.10267.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37195.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   124   1e-29

>AT2G37195.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; Has 23 Blast hits to 23 proteins in 10 species:
           Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
           - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
           BLink). | chr2:15620370-15621464 FORWARD LENGTH=133
          Length = 133

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 90/127 (70%), Gaps = 1/127 (0%)

Query: 3   GVKRSSILLTLAFLMFMGIAVYFRLWAIDYNMSSDDTELIRRQFDLANREAMDESAEWRL 62
           G +R +IL+ L   + +GI VY RLW IDY +SSDDTE +RRQFDLANREAMDESA+WR 
Sbjct: 4   GSERKTILVGLVLALVLGIGVYLRLWTIDYTLSSDDTERLRRQFDLANREAMDESADWRR 63

Query: 63  KYDEEVNRANKCLKELRAFQESSKKAEDASGINHKLAILQKENAILLERVETLKREVEDE 122
            +D+E  +A+KC  EL   +ESS      +  N KL  L+KENA LL ++ETLK+E+E  
Sbjct: 64  MFDKEAEKASKCNTELSLIKESSGNGNTFTS-NQKLESLKKENAALLIQIETLKQELEAS 122

Query: 123 KSKCNSR 129
           + KC+SR
Sbjct: 123 RLKCHSR 129