Miyakogusa Predicted Gene

Lj0g3v0164179.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0164179.2 Non Chatacterized Hit- tr|J3L465|J3L465_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G4,41.67,1e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.10271.2
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28300.2 | Symbols:  | Protein of unknown function (DUF1421) ...   104   3e-23
AT4G28300.1 | Symbols:  | Protein of unknown function (DUF1421) ...   104   3e-23
AT3G01560.1 | Symbols:  | Protein of unknown function (DUF1421) ...    58   4e-09
AT5G14540.1 | Symbols:  | Protein of unknown function (DUF1421) ...    50   8e-07

>AT4G28300.2 | Symbols:  | Protein of unknown function (DUF1421) |
           chr4:14015414-14016823 FORWARD LENGTH=438
          Length = 438

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 83/127 (65%), Gaps = 13/127 (10%)

Query: 1   MKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQE 60
           MK Y DN+MRFLEG+SS+LSQLEL+ YNLD++IGEM+SEL     +   KL+SL+KHLQE
Sbjct: 31  MKMYADNMMRFLEGLSSRLSQLELYCYNLDKTIGEMRSELTHAHEDADVKLRSLDKHLQE 90

Query: 61  IHSSEQVLR------------VKPQLAQKESSSLRHSLSNEDR-SPSTKYAKKTDNASDA 107
           +H S Q+LR             K QL QKESSS  HS   EDR +      KK++N SDA
Sbjct: 91  VHRSVQILRDKQELADTQKELAKLQLVQKESSSSSHSQHGEDRVATPVPEPKKSENTSDA 150

Query: 108 PNRWISF 114
            N+ ++ 
Sbjct: 151 HNQQLAL 157


>AT4G28300.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr4:14014860-14016823 FORWARD LENGTH=496
          Length = 496

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 83/127 (65%), Gaps = 13/127 (10%)

Query: 1   MKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQE 60
           MK Y DN+MRFLEG+SS+LSQLEL+ YNLD++IGEM+SEL     +   KL+SL+KHLQE
Sbjct: 89  MKMYADNMMRFLEGLSSRLSQLELYCYNLDKTIGEMRSELTHAHEDADVKLRSLDKHLQE 148

Query: 61  IHSSEQVLR------------VKPQLAQKESSSLRHSLSNEDR-SPSTKYAKKTDNASDA 107
           +H S Q+LR             K QL QKESSS  HS   EDR +      KK++N SDA
Sbjct: 149 VHRSVQILRDKQELADTQKELAKLQLVQKESSSSSHSQHGEDRVATPVPEPKKSENTSDA 208

Query: 108 PNRWISF 114
            N+ ++ 
Sbjct: 209 HNQQLAL 215


>AT3G01560.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr3:219884-221707 FORWARD LENGTH=511
          Length = 511

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 1   MKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQE 60
           MKK+ D L+  +EG+S++LSQLE   +NL+  + ++K  ++ + G    K++ L+  L E
Sbjct: 138 MKKHTDTLLHVMEGVSARLSQLETRTHNLENLVDDLKVSVDNSHGSTDGKMRQLKNILVE 197

Query: 61  IHSSEQVLRVKPQLAQKESSSLRHSLSNE 89
           + S  Q+L+ K ++ + + S  +H +SN+
Sbjct: 198 VQSGVQLLKDKQEILEAQLS--KHQVSNQ 224


>AT5G14540.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr5:4687333-4689624 REVERSE LENGTH=547
          Length = 547

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 54/95 (56%)

Query: 1   MKKYVDNLMRFLEGISSKLSQLELHYYNLDQSIGEMKSELNFNLGEQYSKLKSLEKHLQE 60
           MK + D L+  +EG+S++L+QLE    +L+  + ++K  +  + G+   KL+ LE  + E
Sbjct: 134 MKAHADKLLHVMEGVSARLTQLETRTRDLENLVDDVKVSVGNSHGKTDGKLRQLENIMLE 193

Query: 61  IHSSEQVLRVKPQLAQKESSSLRHSLSNEDRSPST 95
           + +  Q+L+ K ++ + +    +  LS  ++ P T
Sbjct: 194 VQNGVQLLKDKQEIVEAQLQLSKLQLSKVNQQPET 228