Miyakogusa Predicted Gene

Lj0g3v0163939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163939.1 Non Chatacterized Hit- tr|D8RZ39|D8RZ39_SELML
Putative uncharacterized protein OS=Selaginella
moelle,33.04,1e-18,SUBFAMILY NOT NAMED,NULL; RING FINGER
PROTEIN-RELATED,NULL; seg,NULL; coiled-coil,NULL,CUFF.10237.1
         (254 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44950.1 | Symbols: RDO4, HUB1 | histone mono-ubiquitination ...   140   7e-34

>AT2G44950.1 | Symbols: RDO4, HUB1 | histone mono-ubiquitination 1 |
           chr2:18542602-18548247 REVERSE LENGTH=878
          Length = 878

 Score =  140 bits (354), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/254 (37%), Positives = 138/254 (54%), Gaps = 3/254 (1%)

Query: 1   MGSMGDSDRKRRHXXXXXXXXXXXXXXXXXXXXXISEDKKLDIAVXXXXXXXXXXXXXXX 60
           M S G+ DRKRRH                      SEDK LD AV               
Sbjct: 1   MASTGEPDRKRRHFSSISPSEAAAAVKKQPFFWPSSEDK-LDTAVLQFQNLKLSQKLEAQ 59

Query: 61  XXEYAALENKLSQLNESQHSYDSALTVVKKSWEQMVNDLESSSEGTRESSCKSDSRFASV 120
             E + LE+KLSQ+ E Q  Y+S+L  V KSWE++   +ES S    +SS  +  RF + 
Sbjct: 60  QVECSILEDKLSQIKEKQLPYNSSLKTVHKSWEKLTASVESCSVRVSDSSSGA-HRFVN- 117

Query: 121 MNDCSSSTVQDVFLSRLMQTGATESSSTYRFANQMEEHNEITAEKAKSILKNVVTATNNL 180
             D SS  V++ F++RL++TGATESSS+   +NQMEE+   T+ +    L N+V AT +L
Sbjct: 118 KEDGSSPAVKNDFINRLLETGATESSSSNICSNQMEENGVNTSSQMTQTLYNLVAATEDL 177

Query: 181 WGMKDGLHTALLKKLPGDVSCRQKLSADLEVEVKNLRLAFSELHLKHKSLASELQFQKDH 240
             +KD L+  +L+   G   C Q   ++LE E+K+ R    ++ +K KSL+ ELQ  +D 
Sbjct: 178 RCLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFRGDLDDVLVKFKSLSRELQSHRDA 237

Query: 241 DAKNKADLKRLKGK 254
           DAK + DLKR++G+
Sbjct: 238 DAKVRVDLKRIRGE 251