Miyakogusa Predicted Gene

Lj0g3v0163489.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163489.1 tr|A9SJ85|A9SJ85_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_130836,42.86,8e-18,Sec63,Sec63 domain; no
description,NULL; SUBFAMILY NOT NAMED,NULL; HELICASE
SKI2W,NULL,CUFF.10191.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61140.2 | Symbols:  | U5 small nuclear ribonucleoprotein hel...   147   2e-36
AT5G61140.1 | Symbols:  | U5 small nuclear ribonucleoprotein hel...   147   2e-36
AT2G42270.1 | Symbols:  | U5 small nuclear ribonucleoprotein hel...    63   5e-11
AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprot...    58   1e-09
AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprot...    58   1e-09

>AT5G61140.2 | Symbols:  | U5 small nuclear ribonucleoprotein helicase
            | chr5:24589999-24603311 FORWARD LENGTH=2157
          Length = 2157

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 93/122 (76%), Gaps = 6/122 (4%)

Query: 7    FNQDLQHFPRVKMKLRLQSRETD-----STLHIRLENINSRRHSSRAFVPRFPKIKEEQW 61
             +QDLQ FPR++M +RLQ +++D     STL IRLE   S+R+SSRA  PRFPK+K+E W
Sbjct: 2034 LSQDLQRFPRIQMNVRLQKKDSDGKKKPSTLEIRLEK-TSKRNSSRALAPRFPKVKDEAW 2092

Query: 62   WLILGNSCTSELYALKRVSFSDHLNTSMKLPLTSANLEEMKLILVSDCYIGFEQEHSIGE 121
            WL+LG++ TSEL+A+KRVSF+  L T M+LP    + ++ KLILVSDCY+GFEQEHSI +
Sbjct: 2093 WLVLGDTSTSELFAVKRVSFTGRLITRMELPPNITSFQDTKLILVSDCYLGFEQEHSIEQ 2152

Query: 122  LV 123
            L 
Sbjct: 2153 LA 2154


>AT5G61140.1 | Symbols:  | U5 small nuclear ribonucleoprotein helicase
            | chr5:24589999-24603311 FORWARD LENGTH=2146
          Length = 2146

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 93/122 (76%), Gaps = 6/122 (4%)

Query: 7    FNQDLQHFPRVKMKLRLQSRETD-----STLHIRLENINSRRHSSRAFVPRFPKIKEEQW 61
             +QDLQ FPR++M +RLQ +++D     STL IRLE   S+R+SSRA  PRFPK+K+E W
Sbjct: 2023 LSQDLQRFPRIQMNVRLQKKDSDGKKKPSTLEIRLEK-TSKRNSSRALAPRFPKVKDEAW 2081

Query: 62   WLILGNSCTSELYALKRVSFSDHLNTSMKLPLTSANLEEMKLILVSDCYIGFEQEHSIGE 121
            WL+LG++ TSEL+A+KRVSF+  L T M+LP    + ++ KLILVSDCY+GFEQEHSI +
Sbjct: 2082 WLVLGDTSTSELFAVKRVSFTGRLITRMELPPNITSFQDTKLILVSDCYLGFEQEHSIEQ 2141

Query: 122  LV 123
            L 
Sbjct: 2142 LA 2143


>AT2G42270.1 | Symbols:  | U5 small nuclear ribonucleoprotein helicase
            | chr2:17604330-17610848 FORWARD LENGTH=2172
          Length = 2172

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 29   DSTLHIRLE-NINSRRHSSRAFVPRFPKIKEEQWWLILGNSCTSELYALKRVSFSDHLNT 87
            D TL + LE ++  R        PR+PK KEE WWL++G + T++L A+KR+S       
Sbjct: 2065 DITLQVLLERDMEGRTEVGPVDAPRYPKTKEEGWWLVVGEAKTNQLMAIKRISLQRKAQV 2124

Query: 88   SMKLPLTSANLEE-MKLILVSDCYIGFEQEHS 118
             ++  + +   E+   L  + D Y+G +QE+S
Sbjct: 2125 KLEFAVPTETGEKSYTLYFMCDSYLGCDQEYS 2156


>AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
            helicase, putative | chr1:7302591-7309914 REVERSE
            LENGTH=2171
          Length = 2171

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 14   FPRVKMKLRLQSRE-----TDSTLHIRLE-NINSRRHSSRAFVPRFPKIKEEQWWLILGN 67
            FP + +   +   E      + TL + LE ++  R         R+PK KEE WWL++G+
Sbjct: 2044 FPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGWWLVVGD 2103

Query: 68   SCTSELYALKRVSFSDHLNTSMKLPLTSANLEE-MKLILVSDCYIGFEQEHS 118
            + T++L A+KRVS    +   +     S   E+   L  + D Y+G +QE+S
Sbjct: 2104 TKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYS 2155


>AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
            helicase, putative | chr1:7302591-7309914 REVERSE
            LENGTH=2171
          Length = 2171

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 14   FPRVKMKLRLQSRE-----TDSTLHIRLE-NINSRRHSSRAFVPRFPKIKEEQWWLILGN 67
            FP + +   +   E      + TL + LE ++  R         R+PK KEE WWL++G+
Sbjct: 2044 FPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGWWLVVGD 2103

Query: 68   SCTSELYALKRVSFSDHLNTSMKLPLTSANLEE-MKLILVSDCYIGFEQEHS 118
            + T++L A+KRVS    +   +     S   E+   L  + D Y+G +QE+S
Sbjct: 2104 TKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYS 2155