Miyakogusa Predicted Gene

Lj0g3v0163169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163169.1 Non Chatacterized Hit- tr|I1LZ82|I1LZ82_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,94.12,0,no
description,Aspartate decarboxylase-like fold; CDC48_N,CDC48,
N-terminal subdomain; CELL DIVISION,CUFF.10196.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03340.1 | Symbols:  | ATPase, AAA-type, CDC48 protein | chr5...   223   2e-59
AT3G53230.1 | Symbols:  | ATPase, AAA-type, CDC48 protein | chr3...   223   2e-59
AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division cy...   215   4e-57

>AT5G03340.1 | Symbols:  | ATPase, AAA-type, CDC48 protein |
           chr5:810091-813133 REVERSE LENGTH=810
          Length = 810

 Score =  223 bits (569), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 117/120 (97%), Gaps = 1/120 (0%)

Query: 1   MANQPESSDSKGTKRDYSTAILERKKAPNRLVVDEAVNDDNSVVALHPETMEKLQLFRGD 60
           M+N+PESSDSK TK+D+STAILERKK+PNRLVVDEA+NDDNSVV+LHP TMEKLQLFRGD
Sbjct: 1   MSNEPESSDSK-TKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGD 59

Query: 61  TILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVH 120
           TILIKGKKRKDT+CIALAD+TCEEPKIRMNKVVR+NLRVRLGDV+SVHQC DVKYGKRVH
Sbjct: 60  TILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVH 119


>AT3G53230.1 | Symbols:  | ATPase, AAA-type, CDC48 protein |
           chr3:19723416-19726489 FORWARD LENGTH=815
          Length = 815

 Score =  223 bits (568), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 116/120 (96%)

Query: 1   MANQPESSDSKGTKRDYSTAILERKKAPNRLVVDEAVNDDNSVVALHPETMEKLQLFRGD 60
           MANQ ESSDSKGTK+D+STAILE+KKA NRLVVDEA+NDDNSVV+LHP+TMEKLQLFRGD
Sbjct: 1   MANQAESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD 60

Query: 61  TILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVH 120
           TILIKGKKRKDT+CIALAD+TC+EPKIRMNKVVR+NLRVRLGDV+SVHQC DVKYG RVH
Sbjct: 61  TILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVH 120


>AT3G09840.1 | Symbols: CDC48, ATCDC48, CDC48A | cell division cycle
           48 | chr3:3019494-3022832 FORWARD LENGTH=809
          Length = 809

 Score =  215 bits (548), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 114/120 (95%), Gaps = 1/120 (0%)

Query: 1   MANQPESSDSKGTKRDYSTAILERKKAPNRLVVDEAVNDDNSVVALHPETMEKLQLFRGD 60
           M+   ESSDSK +K+D+STAILERKK+PNRLVVDEA+NDDNSVV+LHP TMEKLQLFRGD
Sbjct: 1   MSTPAESSDSK-SKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGD 59

Query: 61  TILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVH 120
           TILIKGKKRKDT+CIALAD+TCEEPKIRMNKVVR+NLRVRLGDV+SVHQC DVKYGKRVH
Sbjct: 60  TILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVH 119