Miyakogusa Predicted Gene

Lj0g3v0163059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0163059.1 tr|A9RAW2|A9RAW2_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,40.6,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.10862.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17840.1 | Symbols: ERD7 | Senescence/dehydration-associated ...   130   5e-31
AT3G51250.1 | Symbols:  | Senescence/dehydration-associated prot...   127   6e-30
AT4G35985.1 | Symbols:  | Senescence/dehydration-associated prot...   113   8e-26
AT3G21600.1 | Symbols:  | Senescence/dehydration-associated prot...    70   1e-12
AT3G21600.2 | Symbols:  | Senescence/dehydration-associated prot...    70   1e-12
AT4G15450.1 | Symbols:  | Senescence/dehydration-associated prot...    68   4e-12

>AT2G17840.1 | Symbols: ERD7 | Senescence/dehydration-associated
           protein-related | chr2:7755923-7757798 REVERSE
           LENGTH=452
          Length = 452

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 43/209 (20%)

Query: 7   SLYPQVHSTNPDANSPFFHASTSSSMYPSVG-----------NPTTAQQP-------SEH 48
           SLYP V ++NP+A      +S+++++YPS+             P T+  P       +E 
Sbjct: 11  SLYPTVDTSNPEAPINPSSSSSTNNLYPSLDMNDLARNLFPEQPETSSIPVSAPPAATEE 70

Query: 49  VLVTVPGVILHLIEKDSSVHLASGDLNIISLMEGDRVVTVLASVGDQVQWPLAKDVSAVK 108
           V++ + G ILHLI+K  SV LA GDL II +++G+ VV VLASV D++QWPL KD ++VK
Sbjct: 71  VILKISGAILHLIDKSYSVELACGDLEIIRIVQGENVVAVLASVSDEIQWPLTKDENSVK 130

Query: 109 LDDSHYFFTIRVPKE------------GGE--FEVLNYGVTVAAEGRGRGK-ELDEVLEK 153
           +D+SHYFFT+R  KE            GG+   E+LNYG+T+A++G+     EL+++LE 
Sbjct: 131 VDESHYFFTLRPTKEISHDSSDEEDGDGGKNTNEMLNYGLTIASKGQEHLLVELEKILED 190

Query: 154 YCFLSVEKVEGLGNWAVLKSEEKGVAGEE 182
           Y   SV++V          SEE   AGE+
Sbjct: 191 YSSFSVQEV----------SEEAKEAGEK 209


>AT3G51250.1 | Symbols:  | Senescence/dehydration-associated
           protein-related | chr3:19028227-19030442 FORWARD
           LENGTH=463
          Length = 463

 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 124/232 (53%), Gaps = 58/232 (25%)

Query: 7   SLYPQVHSTNPD----------ANSPFFHASTSS-----SMYPSVGNPTTAQQPS----- 46
           ++YPQV  + PD          A+SP+ + S SS     +++P  G+ +  Q PS     
Sbjct: 14  AMYPQVDQSIPDNPFASTNPYVASSPYLYPSLSSHNLGPNLFPDHGDASNDQSPSAPPQA 73

Query: 47  -EHVLVTVPGVILHLIEKDSSVHLASGDLNIISLMEGDRVVTVLASVGDQVQWPLAKDVS 105
            E VL+ VPG IL+LI+K  SV LA GD  I+ +++G  +V VLA+VG+++QWPL K+  
Sbjct: 74  TEEVLIRVPGAILNLIDKSYSVELACGDFTIVRIIQGQNIVAVLANVGNEIQWPLTKNEV 133

Query: 106 AVKLDDSHYFFTIRVPKEGGEF-------------------EVLNYGVTVAAEGRGRGKE 146
           A K+D SHYFF+I  PKE G+                    E+LNYG+T+A+    +G+E
Sbjct: 134 AAKVDGSHYFFSIHPPKEKGQGSGSDSDDEQGQKSKSKSDDEILNYGLTIAS----KGQE 189

Query: 147 -----LDEVLEKYCFLSVEKV---------EGLGNWAVLKSEEKGVAGEEEN 184
                LD+VL  Y   + +++         E LGN  V  +  + + GE ++
Sbjct: 190 NVLLVLDQVLRDYSCFTEQRMSEKAKETGEEVLGNSVVADTSPEELKGERKD 241


>AT4G35985.1 | Symbols:  | Senescence/dehydration-associated
           protein-related | chr4:17032268-17033862 REVERSE
           LENGTH=448
          Length = 448

 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 105/183 (57%), Gaps = 30/183 (16%)

Query: 8   LYPQVHSTNPDANSP----FFHASTSSSMYPSVG----------NPTTAQQPS------E 47
           LYP V ++   A  P       ++ ++++YPS+           +PT +   S      E
Sbjct: 10  LYPTVDTSTTVAPLPKSSSSSSSTNNNNLYPSINVNDLVNNIFPDPTASDSASAPPLATE 69

Query: 48  HVLVTVPGVILHLIEKDSSVHLASGDLNIISLMEGDRVVTVLASVGDQVQWPLAKDVSAV 107
            V++T+ G ++HLI+K  SV LA GDL I+ L++GD  V V A VGD++QWPL KD  AV
Sbjct: 70  EVILTIHGAMVHLIDKSYSVELACGDLEILRLVQGDITVAVFARVGDEIQWPLTKDEPAV 129

Query: 108 KLDDSHYFFTIRVPKEG---------GEFEVLNYGVTVAAEGRGRGKE-LDEVLEKYCFL 157
           K+D+SHYFF++R  KE           E E+LNYG+T+A++G+    E LD++L  Y   
Sbjct: 130 KVDESHYFFSLRPVKESESSDHSVNETENEMLNYGLTMASKGQEPMLEKLDKILADYSSF 189

Query: 158 SVE 160
           + E
Sbjct: 190 TAE 192


>AT3G21600.1 | Symbols:  | Senescence/dehydration-associated
           protein-related | chr3:7606735-7608364 REVERSE
           LENGTH=374
          Length = 374

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 18/150 (12%)

Query: 24  FHASTSSSMYPSVGNPTTAQQPS--------EHVLVTVPGVILHLIEKDSSVHLASGDLN 75
           F  S +S    +  +  T Q PS        E VL+ +P   +HLI +  +V LASGD  
Sbjct: 4   FGPSKASRTRNNEHDKITRQNPSHQPQTMRAEEVLLQIPRCRVHLIGESEAVELASGDFK 63

Query: 76  IISLMEGDRVVTVLASVGDQVQWPLAKDVSAVKLDDSHYFFTIRVPKEGGEFEVLNYGVT 135
           ++ + +    + ++  +G  +QWP+ +D   VKLD   Y FT+ V K+G   + L+YGVT
Sbjct: 64  LVKVSDNGVTLAMIVRIGHDLQWPVIRDEPVVKLDARDYLFTLPV-KDG---DPLSYGVT 119

Query: 136 VAAEGRGRG-----KELDEVL-EKYCFLSV 159
            + + R        K LD+ L E  CF S 
Sbjct: 120 FSGDDRDVALVNSLKLLDQFLSENSCFSST 149


>AT3G21600.2 | Symbols:  | Senescence/dehydration-associated
           protein-related | chr3:7607077-7608364 REVERSE
           LENGTH=299
          Length = 299

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 18/149 (12%)

Query: 24  FHASTSSSMYPSVGNPTTAQQPS--------EHVLVTVPGVILHLIEKDSSVHLASGDLN 75
           F  S +S    +  +  T Q PS        E VL+ +P   +HLI +  +V LASGD  
Sbjct: 4   FGPSKASRTRNNEHDKITRQNPSHQPQTMRAEEVLLQIPRCRVHLIGESEAVELASGDFK 63

Query: 76  IISLMEGDRVVTVLASVGDQVQWPLAKDVSAVKLDDSHYFFTIRVPKEGGEFEVLNYGVT 135
           ++ + +    + ++  +G  +QWP+ +D   VKLD   Y FT+ V K+G   + L+YGVT
Sbjct: 64  LVKVSDNGVTLAMIVRIGHDLQWPVIRDEPVVKLDARDYLFTLPV-KDG---DPLSYGVT 119

Query: 136 VAAEGRGRG-----KELDEVL-EKYCFLS 158
            + + R        K LD+ L E  CF S
Sbjct: 120 FSGDDRDVALVNSLKLLDQFLSENSCFSS 148


>AT4G15450.1 | Symbols:  | Senescence/dehydration-associated
           protein-related | chr4:8839437-8841162 FORWARD
           LENGTH=381
          Length = 381

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 10/127 (7%)

Query: 9   YPQVHSTNPDANSPFFHASTSSSMYPSVGNPTTAQQPSEHVLVTVPGVILHLIEKDSSVH 68
           + +  ++  +   P  +     +MY S G        S+ VL+ + G   HLI    +V 
Sbjct: 3   FFRSKTSKTETQQPSSYGQQQDAMYSSYGTV------SDEVLLQIHGCRAHLINGSEAVE 56

Query: 69  LASGDLNIISLMEGDRVVTVLASVGDQVQWPLAKDVSAVKLDDSHYFFTIRVPKEGGEFE 128
           LA+GD  ++ +++ +  + ++  +G+ +QWP+ KD   VKLD   Y FT+ V K+G   E
Sbjct: 57  LAAGDFELVQVLDSNVALAMVVRIGNDLQWPVIKDEPVVKLDSRDYLFTLPV-KDG---E 112

Query: 129 VLNYGVT 135
            L+YG+T
Sbjct: 113 PLSYGIT 119