Miyakogusa Predicted Gene
- Lj0g3v0162499.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0162499.1 Non Chatacterized Hit- tr|D7TFE1|D7TFE1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,65.62,0.00005,
,22158_g.1
(52 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31600.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-06
AT1G31600.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 2e-06
AT1G31600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 2e-06
>AT1G31600.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:11313376-11314944 REVERSE LENGTH=344
Length = 344
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 24 AIYPPLRSLLLLSGETCYGWHHHIPHHEV 52
A+Y P RS+LLLSGE Y W+H+IPHH++
Sbjct: 275 ALYLPPRSMLLLSGEARYAWNHYIPHHKI 303
>AT1G31600.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:11313376-11315199 REVERSE LENGTH=431
Length = 431
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 24 AIYPPLRSLLLLSGETCYGWHHHIPHHEV 52
A+Y P RS+LLLSGE Y W+H+IPHH++
Sbjct: 362 ALYLPPRSMLLLSGEARYAWNHYIPHHKI 390
>AT1G31600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:11313376-11315199 REVERSE LENGTH=431
Length = 431
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 24 AIYPPLRSLLLLSGETCYGWHHHIPHHEV 52
A+Y P RS+LLLSGE Y W+H+IPHH++
Sbjct: 362 ALYLPPRSMLLLSGEARYAWNHYIPHHKI 390