Miyakogusa Predicted Gene

Lj0g3v0162499.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0162499.1 Non Chatacterized Hit- tr|D7TFE1|D7TFE1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,65.62,0.00005,
,22158_g.1
         (52 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31600.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   1e-06
AT1G31600.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    47   2e-06
AT1G31600.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    47   2e-06

>AT1G31600.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:11313376-11314944 REVERSE LENGTH=344
          Length = 344

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 24/29 (82%)

Query: 24  AIYPPLRSLLLLSGETCYGWHHHIPHHEV 52
           A+Y P RS+LLLSGE  Y W+H+IPHH++
Sbjct: 275 ALYLPPRSMLLLSGEARYAWNHYIPHHKI 303


>AT1G31600.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:11313376-11315199 REVERSE LENGTH=431
          Length = 431

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 24/29 (82%)

Query: 24  AIYPPLRSLLLLSGETCYGWHHHIPHHEV 52
           A+Y P RS+LLLSGE  Y W+H+IPHH++
Sbjct: 362 ALYLPPRSMLLLSGEARYAWNHYIPHHKI 390


>AT1G31600.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:11313376-11315199 REVERSE LENGTH=431
          Length = 431

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/29 (62%), Positives = 24/29 (82%)

Query: 24  AIYPPLRSLLLLSGETCYGWHHHIPHHEV 52
           A+Y P RS+LLLSGE  Y W+H+IPHH++
Sbjct: 362 ALYLPPRSMLLLSGEARYAWNHYIPHHKI 390