Miyakogusa Predicted Gene

Lj0g3v0162439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0162439.1 tr|I1MER5|I1MER5_SOYBN Ribosomal protein L34
OS=Glycine max PE=3 SV=1,64.17,5e-16,seg,NULL,CUFF.10298.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29070.1 | Symbols:  | Ribosomal protein L34 | chr1:10149884-...    62   6e-11

>AT1G29070.1 | Symbols:  | Ribosomal protein L34 |
           chr1:10149884-10151155 FORWARD LENGTH=157
          Length = 157

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 39/48 (81%), Gaps = 2/48 (4%)

Query: 69  DLISNAGTGNGKRR-GLVVRAGKKFALCQTKRNRSRKSLARTHGFRRR 115
           DL S     NG+RR GLVVRAGK  ALCQTKR+RSRKSLARTHGFRRR
Sbjct: 78  DLSSQTSGLNGQRRRGLVVRAGKA-ALCQTKRSRSRKSLARTHGFRRR 124