Miyakogusa Predicted Gene

Lj0g3v0162189.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0162189.1 tr|A9T521|A9T521_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_88177
,26.14,0.000000000002,seg,NULL,CUFF.10091.1
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22030.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein BY...   317   7e-87
AT1G77855.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   296   1e-80

>AT1G22030.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein
           BYPASS related (InterPro:IPR008511); BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in
           17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
           - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:7759337-7760415 REVERSE
           LENGTH=333
          Length = 333

 Score =  317 bits (812), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 180/336 (53%), Positives = 223/336 (66%), Gaps = 17/336 (5%)

Query: 1   MDPSSTNSVNGFYSFLTRGIDDLERVFLSNNFMSIQFXXXXXXXXXXXXXXXXXXVQKLH 60
           MDPS  NSVNGFYSFL R ++DLERV+LSNNFMS+ F                  VQKL 
Sbjct: 1   MDPSCANSVNGFYSFLNRSMEDLERVYLSNNFMSVHFLQRALCLLRTSHSHLTLLVQKLQ 60

Query: 61  LPVGDKWLDEYMDESSKLWEACHVLKSGISGIESYFSAASNITSSLDSHQHITSQLSRQV 120
           LPVGDKWLDEYMDESSKLWEAC V+KS +S +E++ SA  +I S+LD  + ++ QLSRQV
Sbjct: 61  LPVGDKWLDEYMDESSKLWEACLVIKSAVSSVENFSSAGISIASTLD--RRLSPQLSRQV 118

Query: 121 IRAISGCRREAVGLEEENRALMETRIQ--PLSLRFDERVSIESKL---NGFNGFRGVLYA 175
           IRAISGCRREA+G+EEENRALME R+Q  P         ++ES     NGF+GFRGVLYA
Sbjct: 119 IRAISGCRREAIGIEEENRALMENRVQRFPFWSEQTSATAMESSTKLQNGFSGFRGVLYA 178

Query: 176 MRNVSSXXXXXXXXXXVYCWPESSDFEVGGYEYEGCLFLGSAFMISTARLQRRVAAEIGQ 235
            RN+SS          VYC+P  +  +      +    +G  F  +  RLQ+RVAAE+G+
Sbjct: 179 TRNMSSLLLMVLMNGLVYCFPGDAATQTQTQITQTQSQVG-GFAGAMGRLQQRVAAEVGR 237

Query: 236 MNGGAGMLMHEFRRSKVAMEDLRGEL---------ERRGVVMDWETEVGVRDRVENLRAS 286
           M    G+LMHE+RRSK A+E+L+ EL                + E E  +R+RVENL+  
Sbjct: 238 MGIRKGILMHEYRRSKAALEELKAELERRFCGGGGGGGEREEEEEDERELRERVENLKGY 297

Query: 287 FGVLRSGAENIIAQLDDFFDEIVEGRKKLLDFCSHR 322
           FG LR+G E+I+AQ+DDFFDEIVEGRKKLLDFCSHR
Sbjct: 298 FGNLRNGTESIVAQIDDFFDEIVEGRKKLLDFCSHR 333


>AT1G77855.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G22030.1); Has 120 Blast hits to 120 proteins
           in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:29277244-29278388 REVERSE
           LENGTH=317
          Length = 317

 Score =  296 bits (758), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/334 (51%), Positives = 223/334 (66%), Gaps = 29/334 (8%)

Query: 1   MDPSSTNSVNGFYSFLTRGIDDLERVFLSNNFMSIQFXXXXXXXXXXXXXXXXXXVQKLH 60
           MD S +NSVNGFYSFL R ++DLERV++SNNFMS+QF                  VQKL+
Sbjct: 1   MDQSCSNSVNGFYSFLNRSMEDLERVYISNNFMSLQFLQRVICLLRTSHSHLTLLVQKLN 60

Query: 61  LPVGDKWLDEYMDESSKLWEACHVLKSGISGIESYFSAASNITSSLDSHQH----ITSQL 116
           LPVGDKWLD+YMDE+SKLW+ CHV+KS IS IES+ S+A +ITS+LD H H    ++ Q+
Sbjct: 61  LPVGDKWLDDYMDETSKLWDVCHVIKSAISTIESFCSSAISITSTLDGHYHHRRLLSPQI 120

Query: 117 SRQVIRAISGCRREAVGLEEENRALMETRIQPLSLRFDERVSI----ESKL-NGFNGFRG 171
           SRQVIRAISGCRREAVG+EEENRALME RIQ     + E+V+      SK+ NGF+GFRG
Sbjct: 121 SRQVIRAISGCRREAVGIEEENRALMENRIQRFPF-WSEQVTTTGMESSKIQNGFSGFRG 179

Query: 172 VLYAMRNVSSXXXXXXXXXXVYCWPESSDFEVGGYEYEGCLFLGSAFMISTARLQRRVAA 231
           V+  M+N++S          VY  P  +    G                +  RL++RVAA
Sbjct: 180 VMNTMKNINSLLLVILMQGLVYYIPGDTTVPTG----------------TMMRLKQRVAA 223

Query: 232 EIGQMNGGAGMLMHEFRRSKVAMEDLRGEL---ERRGVVMDWETEVGVRDRVENLRASFG 288
           E+ ++    GM+M+E+RRSK AME+L+ EL      G   +   E G+R+R+ENL+ S G
Sbjct: 224 EMERIGVRKGMMMYEYRRSKTAMEELKVELERRCCGGGGEEEAVEKGLRERIENLKGSVG 283

Query: 289 VLRSGAENIIAQLDDFFDEIVEGRKKLLDFCSHR 322
            LR+G E+I+AQ+DDFFD+IV+GRK LLD+CSHR
Sbjct: 284 SLRNGTESIVAQIDDFFDDIVDGRKMLLDYCSHR 317