Miyakogusa Predicted Gene

Lj0g3v0161759.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0161759.4 tr|D3GBU9|D3GBU9_LOTJA YABBY1 protein OS=Lotus
japonicus GN=YABBY1 PE=2 SV=1,97.13,0,SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; seg,NULL; YABBY,YABBY protein,CUFF.10062.4
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcrip...   241   3e-64
AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription facto...   221   4e-58
AT4G00180.2 | Symbols: YAB3 | Plant-specific transcription facto...   195   2e-50
AT2G26580.2 | Symbols: YAB5 | plant-specific transcription facto...   177   4e-45
AT2G26580.1 | Symbols: YAB5 | plant-specific transcription facto...   177   4e-45
AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription facto...   173   9e-44
AT1G23420.1 | Symbols: INO | Plant-specific transcription factor...   132   1e-31
AT1G69180.1 | Symbols: CRC | Plant-specific transcription factor...   118   3e-27

>AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific
           transcription factor YABBY family protein |
           chr2:18628450-18630552 REVERSE LENGTH=229
          Length = 229

 Score =  241 bits (614), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 132/215 (61%), Positives = 160/215 (74%), Gaps = 9/215 (4%)

Query: 13  DHQLPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQ 72
           DH   PS+ LCYV CN C TILAV+VP TSLFKTVTVRCG CTNLL VNMR+ +LP+ NQ
Sbjct: 17  DH-FSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQ 75

Query: 73  FHLG---HSFFSPPHNLLGEMPN-PSPNFLMNHTNATSNFSQFSVPARSAADELPRPPII 128
             L    HS+F+P  ++L E+ + PS   +M      +     S        E+P+ P +
Sbjct: 76  LQLQLGPHSYFNP-QDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPV 134

Query: 129 NRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPD-Q 187
           NRPPEKRQRVPSAYNRFIK+EIQRIK+ NPDI+HREAFSAAAKNWAHFPHIHFGL+PD Q
Sbjct: 135 NRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQ 194

Query: 188 TMKKTTVCQQEGEEVLMMKDGFY--ASANVGVSPY 220
            +KKT + QQEGE+ ++MK+GFY  A+ANVGV+PY
Sbjct: 195 PVKKTNMPQQEGEDNMVMKEGFYAPAAANVGVTPY 229


>AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription factor
           YABBY family protein | chr4:72804-75089 REVERSE
           LENGTH=240
          Length = 240

 Score =  221 bits (562), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 137/225 (60%), Positives = 158/225 (70%), Gaps = 22/225 (9%)

Query: 13  DHQLPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPV--NMRALLLPSP 70
           DH    ++QLCYVHC+ CDT+LAVSVP +SLFKTVTVRCGHC+NLL V  +MRALLLPS 
Sbjct: 17  DH-FSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSV 75

Query: 71  NQFHLGHSFFSPPH-----NLLGEMPNPSPNFLMN-----HTNATSNFSQFSVPARSAAD 120
           +   LGHSF  PP      NLL EM +   N  MN     H +A        +  R+   
Sbjct: 76  SN--LGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRS 133

Query: 121 -----ELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAH 175
                E+PRPP  NRPPEKRQRVPSAYNRFIK+EIQRIK+ NPDI+HREAFSAAAKNWAH
Sbjct: 134 VDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAH 193

Query: 176 FPHIHFGLMPDQ-TMKKTTVCQQEGEEVLMMKDGFYAS-ANVGVS 218
           FPHIHFGLM D    KK  V QQEGE+ +M ++GFY S ANVGV+
Sbjct: 194 FPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFYGSAANVGVA 238


>AT4G00180.2 | Symbols: YAB3 | Plant-specific transcription factor
           YABBY family protein | chr4:72804-74888 REVERSE
           LENGTH=209
          Length = 209

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 143/209 (68%), Gaps = 21/209 (10%)

Query: 29  ICDTILAVSVPSTSLFKTVTVRCGHCTNLLPV--NMRALLLPSPNQFHLGHSFFSPPH-- 84
           +CD    VSVP +SLFKTVTVRCGHC+NLL V  +MRALLLPS +   LGHSF  PP   
Sbjct: 1   MCDINWQVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSN--LGHSFLPPPPPP 58

Query: 85  ---NLLGEMPNPSPNFLMN-----HTNATSNFSQFSVPARSAA-----DELPRPPIINRP 131
              NLL EM +   N  MN     H +A        +  R+        E+PRPP  NRP
Sbjct: 59  PPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRP 118

Query: 132 PEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQ-TMK 190
           PEKRQRVPSAYNRFIK+EIQRIK+ NPDI+HREAFSAAAKNWAHFPHIHFGLM D    K
Sbjct: 119 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTK 178

Query: 191 KTTVCQQEGEEVLMMKDGFYAS-ANVGVS 218
           K  V QQEGE+ +M ++GFY S ANVGV+
Sbjct: 179 KANVRQQEGEDGMMGREGFYGSAANVGVA 207


>AT2G26580.2 | Symbols: YAB5 | plant-specific transcription factor
           YABBY family protein | chr2:11303923-11306739 REVERSE
           LENGTH=164
          Length = 164

 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 111/168 (66%), Gaps = 23/168 (13%)

Query: 19  SEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALL--LPSPNQFHLG 76
           +EQLCY+ CN C+ ILAV+VP +SLF  VTVRCGHCTNL  VNM A L  L  PN     
Sbjct: 8   TEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPN----- 62

Query: 77  HSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPPEKRQ 136
              F   +  + E               +S+ S   +P+R +   +    I+NRPPEKRQ
Sbjct: 63  ---FQATNYAVPEY-------------GSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQ 106

Query: 137 RVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLM 184
           RVPSAYN+FIK+EIQRIK+ NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 107 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 154


>AT2G26580.1 | Symbols: YAB5 | plant-specific transcription factor
           YABBY family protein | chr2:11303923-11306739 REVERSE
           LENGTH=164
          Length = 164

 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/168 (55%), Positives = 111/168 (66%), Gaps = 23/168 (13%)

Query: 19  SEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALL--LPSPNQFHLG 76
           +EQLCY+ CN C+ ILAV+VP +SLF  VTVRCGHCTNL  VNM A L  L  PN     
Sbjct: 8   TEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPN----- 62

Query: 77  HSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPPEKRQ 136
              F   +  + E               +S+ S   +P+R +   +    I+NRPPEKRQ
Sbjct: 63  ---FQATNYAVPEY-------------GSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQ 106

Query: 137 RVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLM 184
           RVPSAYN+FIK+EIQRIK+ NPDI+HREAFS AAKNWAHFPHIHFGLM
Sbjct: 107 RVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 154


>AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription factor
           YABBY family protein | chr1:2676033-2679382 FORWARD
           LENGTH=184
          Length = 184

 Score =  173 bits (438), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 125/195 (64%), Gaps = 20/195 (10%)

Query: 19  SEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHS 78
           SE++CYVHC+ C TILAVSVP  SLF  VTVRCGHCTNLL +N+   L          H 
Sbjct: 7   SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSL----------HQ 56

Query: 79  FFSPP-HNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPR-PPIINRPPEKRQ 136
             +PP H  L      + + +     A+S+ S  ++ + +   E PR PPI  RPPEKRQ
Sbjct: 57  TSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNL-SENIDREAPRMPPI--RPPEKRQ 113

Query: 137 RVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTTVCQ 196
           RVPSAYNRFIK+EIQRIK+ NP+I+HREAFS AAKNWAHFPHIHFGL  D   K     +
Sbjct: 114 RVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKG----K 169

Query: 197 QEGEEVLMMK-DGFY 210
           Q  + V   K +G+Y
Sbjct: 170 QLDQSVAGQKSNGYY 184


>AT1G23420.1 | Symbols: INO | Plant-specific transcription factor
           YABBY family protein | chr1:8317423-8319104 FORWARD
           LENGTH=231
          Length = 231

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 21  QLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVN-MRALLLPSPNQFHLGHSF 79
           Q+C+V C  C TIL VSVP TSL   VTVRCGHCT+LL VN M+A  +P      L H  
Sbjct: 20  QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLD 79

Query: 80  FSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPPEKRQRVP 139
            +    +          + +N     S  +  S       D      ++N+PPEKRQR P
Sbjct: 80  ETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAP 139

Query: 140 SAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIH 180
           SAYN FIK+EI+R+K+ NP + H+EAFS AAKNWAHFP  H
Sbjct: 140 SAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180


>AT1G69180.1 | Symbols: CRC | Plant-specific transcription factor
           YABBY family protein | chr1:26007734-26008940 REVERSE
           LENGTH=181
          Length = 181

 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 92/165 (55%), Gaps = 29/165 (17%)

Query: 17  PPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLG 76
           P +E L YV C+IC+TILAV +P   +  TVTV+CGHC NL       L    P Q H+ 
Sbjct: 16  PQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNL-----SFLTTTPPLQGHVS 70

Query: 77  HSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQ-----FSVPARSAADELPRPPIINRP 131
            +                   L   +   S++ +      S    S     P PP + +P
Sbjct: 71  LT-------------------LQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKP 111

Query: 132 PEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHF 176
           PEK+QR+PSAYNRF++DEIQRIKS NP+I HREAFSAAAKNWA +
Sbjct: 112 PEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156