Miyakogusa Predicted Gene

Lj0g3v0161589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0161589.1 Non Chatacterized Hit- tr|I3ST46|I3ST46_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,84.21,9e-17,seg,NULL; SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT
SEC11,Peptidase S26B, eukaryotic signal peptida,CUFF.10032.1
         (61 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15710.1 | Symbols:  | Peptidase S24/S26A/S26B/S26C family pr...    60   2e-10
AT1G52600.1 | Symbols:  | Peptidase S24/S26A/S26B/S26C family pr...    59   6e-10

>AT3G15710.1 | Symbols:  | Peptidase S24/S26A/S26B/S26C family
          protein | chr3:5323564-5324785 REVERSE LENGTH=180
          Length = 180

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 36/54 (66%)

Query: 1  MNSVKSLQVLSQGVTLGMIVTSALIIWKALMCITGXXXXXXXXXXXXXXPGFKR 54
          + S+K  QVL+Q +TLGMIVTSALIIWKAL+C+TG              PGF+R
Sbjct: 11 IKSIKIRQVLTQAITLGMIVTSALIIWKALICVTGSESPVVVVLSESMEPGFQR 64


>AT1G52600.1 | Symbols:  | Peptidase S24/S26A/S26B/S26C family
          protein | chr1:19590612-19592486 FORWARD LENGTH=180
          Length = 180

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 1  MNSVKSLQV---LSQGVTLGMIVTSALIIWKALMCITGXXXXXXXXXXXXXXPGFKR 54
          ++S+KS+Q+    +Q ++LGMIVTSALIIWKALMC+TG              PGFKR
Sbjct: 8  VDSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEPGFKR 64