Miyakogusa Predicted Gene

Lj0g3v0160829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0160829.1 Non Chatacterized Hit- tr|D7KQA7|D7KQA7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,63.89,4e-19,SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN,SSXT;
SSXT,SSXT; seg,NULL,gene.Ljchr0_pseudomol_20120828.path1.gene16206.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family prot...   126   6e-30
AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:3...    94   3e-20
AT1G01160.1 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:7...    84   4e-17
AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:7...    70   5e-13

>AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family
          protein | chr5:10647831-10649620 REVERSE LENGTH=210
          Length = 210

 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 67/74 (90%), Gaps = 1/74 (1%)

Query: 13 ASYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADS 72
          A YY +N VTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQ+RLQRNLMYLAAIADS
Sbjct: 13 AGYYPSN-VTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADS 71

Query: 73 QPQPPTMPGQWNCA 86
          QPQPP++  Q+  A
Sbjct: 72 QPQPPSVHSQYGSA 85


>AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 |
          chr4:357675-358928 FORWARD LENGTH=223
          Length = 223

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 55/65 (84%)

Query: 14 SYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADSQ 73
          S+   NN+T++ IQ+YLDENK LI+ I+E+QN GKL+ECA+ Q+ LQ+NLMYLAAIAD+Q
Sbjct: 14 SFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 73

Query: 74 PQPPT 78
          PQPP 
Sbjct: 74 PQPPA 78


>AT1G01160.1 | Symbols: GIF2 | GRF1-interacting factor 2 |
          chr1:72583-73883 FORWARD LENGTH=195
          Length = 195

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 49/55 (89%)

Query: 19 NNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADSQ 73
          NN+T++ IQ+YLDENK LI+ I+E+QN GKL+ECA+ Q+ LQ+NLMYLAAIAD+Q
Sbjct: 20 NNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 74


>AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 |
           chr1:72583-73883 FORWARD LENGTH=229
          Length = 229

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 40/45 (88%)

Query: 29  YLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADSQ 73
           YLDENK LI+ I+E+QN GKL+ECA+ Q+ LQ+NLMYLAAIAD+Q
Sbjct: 64  YLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQ 108