Miyakogusa Predicted Gene

Lj0g3v0160769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0160769.1 Non Chatacterized Hit- tr|C6T419|C6T419_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.24256
PE,60.66,0.0000000000002,seg,NULL; GCK,GCK,CUFF.9976.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14060.1 | Symbols:  | GCK domain-containing protein | chr1:4...    46   6e-06

>AT1G14060.1 | Symbols:  | GCK domain-containing protein |
           chr1:4817354-4817893 REVERSE LENGTH=179
          Length = 179

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 5   DRRIAWQS---HRRTRRTDHVEKCSQVTAVLKECMDAHADYYEPIL 47
           D  +AW+         + D V  C +VT++LK+CMD H+DYY+PIL
Sbjct: 95  DSFVAWEECVEAAEKNKEDIVTNCMEVTSMLKKCMDEHSDYYQPIL 140