Miyakogusa Predicted Gene

Lj0g3v0159969.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0159969.1 Non Chatacterized Hit- tr|G7KPC4|G7KPC4_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,76,0.00000000000005, ,CUFF.9923.1
         (58 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73380.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...    48   1e-06

>AT1G73380.1 | Symbols:  | unknown protein; CONTAINS InterPro
          DOMAIN/s: Protein of unknown function DUF1308
          (InterPro:IPR010733); Has 162 Blast hits to 160
          proteins in 67 species: Archae - 0; Bacteria - 2;
          Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0;
          Other Eukaryotes - 6 (source: NCBI BLink). |
          chr1:27589100-27590657 FORWARD LENGTH=434
          Length = 434

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 27/38 (71%)

Query: 7  KVAQVELVKQRCRCVIDAIHQLPSSSNITQSCRRTLLK 44
          ++ ++E+ KQRC  VI  I  LP S+ IT SCRRTLLK
Sbjct: 2  EIGEIEIAKQRCESVIRTIENLPLSTAITASCRRTLLK 39