Miyakogusa Predicted Gene
- Lj0g3v0159919.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0159919.1 Non Chatacterized Hit- tr|B8BBH4|B8BBH4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,36.84,0.0000000007,N7-RELATED PROTEIN,NULL; F-BOX/LEUCINE RICH
REPEAT PROTEIN,NULL; RNI-like,NULL; FBOX,F-box domain, c,CUFF.9918.1
(286 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:27... 203 8e-53
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:27... 179 1e-45
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:27... 177 8e-45
AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:27... 159 3e-39
AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:16... 157 7e-39
AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:27... 157 7e-39
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21... 146 1e-35
AT5G52480.2 | Symbols: | RNI-like superfamily protein | chr5:21... 122 3e-28
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5... 102 3e-22
AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 97 2e-20
AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 97 2e-20
AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 97 2e-20
AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 97 2e-20
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 97 2e-20
AT4G30640.1 | Symbols: | RNI-like superfamily protein | chr4:14... 78 7e-15
AT3G48880.2 | Symbols: | RNI-like superfamily protein | chr3:18... 54 8e-08
AT3G48880.1 | Symbols: | RNI-like superfamily protein | chr3:18... 54 8e-08
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 53 2e-07
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 53 3e-07
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 53 3e-07
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 48 7e-06
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protei... 48 1e-05
>AT4G05460.1 | Symbols: | RNI-like superfamily protein |
chr4:2761106-2762400 REVERSE LENGTH=302
Length = 302
Score = 203 bits (517), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 157/260 (60%), Gaps = 10/260 (3%)
Query: 1 MAFSEERPVKEAKGESAEEEPNWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCK 60
MA S P GES NW EL P EL + IL++LG EI NA VC W +VCK
Sbjct: 1 MASSSSPPAAMEVGEST----NWTEL-PPELTSAILHRLGAIEILENAQKVCRSWRRVCK 55
Query: 61 NPLTWRTIDLTNHSH--HAGSKLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGS 118
+P WR ID+ N L C HA++RS G L DI I F T ++L IA S
Sbjct: 56 DPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSS 115
Query: 119 HLRRMRLLNCWEISDEQLSETVKKLPLLEEFEISFSPLSKDTLELMGKCCPHLKVLKFNM 178
+LR +RL+ C +I+D+ E V KLPL EE E+S+ S ++L ++G+CC ++K LK N
Sbjct: 116 NLRSLRLIRCSQITDDGFVEAVVKLPL-EELELSYCSFSVESLRVVGQCCLNMKTLKLNK 174
Query: 179 RGLKGFECDDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVL 238
K E DD+A AIA+TMP+L HLQL GN L++ GL AILD C +LE LDLR C NV L
Sbjct: 175 HPQK--ENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNL 232
Query: 239 SGRLKERCLKQIKDLRLPGD 258
G L++RC + +K +R P D
Sbjct: 233 VGDLQKRCFESVKVVRHPND 252
>AT4G05475.1 | Symbols: | RNI-like superfamily protein |
chr4:2765962-2767957 REVERSE LENGTH=309
Length = 309
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 155/265 (58%), Gaps = 17/265 (6%)
Query: 18 EEEPNWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDLTNHSHHA 77
EE NW++L P EL IL +L + +I NA +C W ++CK+P WR I+L + +
Sbjct: 35 EERINWVDL-PPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRDCLMYE 93
Query: 78 GSKLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLS 137
C H ++ S G L +I+IE F +D +L I D +L+ + + ++++ +
Sbjct: 94 FD-FESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVM 152
Query: 138 ETVKKLPLLEEFEISFSPLSKDTLELMGKCCPHLKVLKFNMRG------------LKGFE 185
++KLPLLE I S + D L+ +G CP LK LK N G + E
Sbjct: 153 NGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLE 211
Query: 186 CDDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLES-LDLRACSNVVLSGRLKE 244
CDD+A AIA++MP+L HLQL+GN LTN GL AILDGCPHLE LD+R C N+ L G L++
Sbjct: 212 CDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNLEK 271
Query: 245 RCLKQIKDLRLPGD-VSEVPKYVDV 268
RC+K+IK+LR P D ++ P + V
Sbjct: 272 RCMKRIKELRRPHDSTADYPYSISV 296
>AT4G05470.1 | Symbols: | RNI-like superfamily protein |
chr4:2763256-2765351 REVERSE LENGTH=304
Length = 304
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 152/269 (56%), Gaps = 23/269 (8%)
Query: 18 EEEPNWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDLTNHSHHA 77
+E NW++L P EL IL +L + +I NA VC W ++CK+P WR I+ T
Sbjct: 41 KERRNWVDL-PPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKIN-TRDCLMY 98
Query: 78 GSKLLKFCLHAIERSCGSLEDISI-EDFCTDEILQSIADSGSHLRRMRLLNCW-EISDEQ 135
+ C H ++ S G L +I++ E F +D +L I D +LR + L C+ ++
Sbjct: 99 NFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDR--NLRSLGLGMCFPRVTKLG 156
Query: 136 LSETVKKLPLLEEFEISFSPLSKDTLELMGKCCPHLKVLKFNMRG--------------- 180
+ + K+PLLE E++ S + D L+ +G CP LK LK N G
Sbjct: 157 VVNAIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLD 215
Query: 181 -LKGFECDDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLS 239
+ ECDD+A AIA++MP+L HLQL+ NRLTN GL AILDGCPHLE LD+R C + L
Sbjct: 216 DMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLV 275
Query: 240 GRLKERCLKQIKDLRLPGDVSEVPKYVDV 268
G L++RCL+ IK+LR PGD + Y V
Sbjct: 276 GNLEKRCLEMIKELRRPGDSTADYPYNGV 304
>AT4G05497.1 | Symbols: | RNI-like superfamily protein |
chr4:2777903-2778801 REVERSE LENGTH=246
Length = 246
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 132/228 (57%), Gaps = 8/228 (3%)
Query: 19 EEPNWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDLTNHSHHAG 78
E NW EL P EL + IL +LG EI NA VC W +VC++P WR ID+ +
Sbjct: 17 EYRNWAEL-PPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVN 75
Query: 79 SKLLKF-----CLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISD 133
S L + C A++ S G L +I+I+ L IAD S+LRR+ +++C +
Sbjct: 76 SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLS 135
Query: 134 EQLSETVKKLPLLEEFEISF-SPLSKDTLELMGKCCPHLKVLKFNMRGLKGFECDDEAFA 192
+ E KLPLLEE +I++ S + + L+++G+ CP+L+ LK N G CD A A
Sbjct: 136 RGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC-CDKVALA 194
Query: 193 IAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSG 240
IA+TMP L HLQL N L+ GL AIL+GCPHL++L L C N+ + G
Sbjct: 195 IAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVG 242
>AT4G03630.1 | Symbols: | RNI-like superfamily protein |
chr4:1608750-1610037 FORWARD LENGTH=220
Length = 220
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 80 KLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLSET 139
+L + HA+ S G +I+IE F TD +L IAD S+LR + L C +I+ L
Sbjct: 24 RLGRMMCHAVALSQGGCVEINIEHFGTDSLLTYIADRSSNLRHLGLAKCDQITGMGLFTE 83
Query: 140 VKKLPLLEEFEISFSPLSKDTLELMGKCCPHLKVLKFNMRGLK--GFECDDEAFAIAKTM 197
KLPLLE+ E+S+ + LE +G C HLK LK N +G K GF D +A IAK M
Sbjct: 84 AMKLPLLEDLELSYCLIKGKNLEAIGFACLHLKTLKLNCQGFKFPGFTYDHDALGIAKRM 143
Query: 198 PQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSGRLKERCLKQIKDLRLPG 257
P+L LQL GNR+++ GL AI DGCPHLE LDLR C N+ L G L++RC+++IKDLR P
Sbjct: 144 PELRCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINLVGDLEKRCMERIKDLRRPN 203
Query: 258 DVSEVPKY 265
D + Y
Sbjct: 204 DSTADYPY 211
>AT4G05490.1 | Symbols: | RNI-like superfamily protein |
chr4:2771044-2772252 REVERSE LENGTH=307
Length = 307
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 17 AEEEP-NWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDLTNHSH 75
EE+P NW EL P +L + IL +L EI NA VC W +V K+PL WR ID+ N
Sbjct: 20 GEEKPSNWAEL-PPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRR 78
Query: 76 -HAGSKLLKFCLHAIERSCGSLEDISIED--FCTDEILQSIADSGSHLRRMRLLNCWEIS 132
+ + C H ++ S G L + +I+ F T +L +A+ S+LRR+R+ +I+
Sbjct: 79 LYCIYAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLRVKGG-QIT 137
Query: 133 DEQLSETVKKLPLLEEFEISFSPLSKDTLELMGKCCPHLKVLKFNMRGLKGF-----ECD 187
+ E + KLPLLEE E+ + + ++ + +G+ CP+LK LK L GF E D
Sbjct: 138 SVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLK-----LVGFWSHLNESD 192
Query: 188 DEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSGRLKERCL 247
++A AIA TMP L HLQL+ N LTN GL AILDGCPHLE LDLR C N+ L G L+ +CL
Sbjct: 193 NDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCL 252
Query: 248 KQIKDLRLPGDVSEVPKYV 266
++IKD R P DV + YV
Sbjct: 253 ERIKDFRCPNDVLDDYNYV 271
>AT5G52480.1 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297762 REVERSE LENGTH=241
Length = 241
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 122/178 (68%), Gaps = 4/178 (2%)
Query: 84 FCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLSETVKKL 143
C +A++RS G L +I+I DF +D +L IA+ S+LR +RL+ C EI+D+ + V KL
Sbjct: 18 ICRNAVDRSEGGLLEINIGDFGSDSLLTYIAERSSNLRSLRLM-CSEITDDGFVQAVVKL 76
Query: 144 PLLEEFEISFSPLSKDTLELMGKCCPHLKVLKFN-MRGLKGFECDDEAFAIAKTMPQLCH 202
P+LEE E+S LS ++++L G CP+LK L N + L + D +A AIA++MP+L H
Sbjct: 77 PMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRLFYLSSDDDDHDAIAIAESMPKLRH 136
Query: 203 LQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSGRLKERCLKQIKDLRLPGDVS 260
LQL GN+LT GL AILDGCPHLE LDLR C N+V G L++RC ++IKDLR D +
Sbjct: 137 LQLCGNKLTKTGLNAILDGCPHLEHLDLRQCINLV--GNLEKRCFEKIKDLRRHNDST 192
>AT5G52480.2 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297529 REVERSE LENGTH=203
Length = 203
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 103/153 (67%), Gaps = 4/153 (2%)
Query: 109 ILQSIADSGSHLRRMRLLNCWEISDEQLSETVKKLPLLEEFEISFSPLSKDTLELMGKCC 168
L +I S+LR +RL+ C EI+D+ + V KLP+LEE E+S LS ++++L G C
Sbjct: 5 FLHTITCRSSNLRSLRLM-CSEITDDGFVQAVVKLPMLEELEVSGISLSGESMKLAGLSC 63
Query: 169 PHLKVLKFN-MRGLKGFECDDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLES 227
P+LK L N + L + D +A AIA++MP+L HLQL GN+LT GL AILDGCPHLE
Sbjct: 64 PNLKTLMLNRLFYLSSDDDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEH 123
Query: 228 LDLRACSNVVLSGRLKERCLKQIKDLRLPGDVS 260
LDLR C N+V G L++RC ++IKDLR D +
Sbjct: 124 LDLRQCINLV--GNLEKRCFEKIKDLRRHNDST 154
>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
chr5:23449916-23450915 REVERSE LENGTH=300
Length = 300
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 138/283 (48%), Gaps = 37/283 (13%)
Query: 18 EEEPNWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDL------T 71
E+ +W L P E+ I+++L I E++T V WL VC++P W DL
Sbjct: 3 EDGSDWGGLAP-EILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSY 61
Query: 72 NHSHHAGS-----KLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLL 126
S H S K+ ++ S G L I + C+D L AD +L+ + +
Sbjct: 62 PESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVR-HCSDHALSYAADRCPNLQVLAIR 120
Query: 127 NCWEISDEQLSETVKKLPLLEEFEISF-SPLSKDTLELMGKCCPHLKVLKFNMRGLKGF- 184
+ ++D +++ + L+E +IS+ +S DTL ++G+ CP+L++LK N+
Sbjct: 121 SSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRH 180
Query: 185 --------------ECDDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDL 230
+ D EA AI K M L HL++ +RL+ GL +I +GCP LE LDL
Sbjct: 181 IGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDL 240
Query: 231 RAC----SNVVLSGRLKERCLKQIK--DLRLP--GDVSEVPKY 265
C S + S + + LK++K D+ +P GDV++ +Y
Sbjct: 241 FGCVHLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERY 283
>AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 125/277 (45%), Gaps = 18/277 (6%)
Query: 22 NWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTID--LTNHSHHAGS 79
+W ELIP L I + L + E+ T VC W + P W+ ID L ++ H
Sbjct: 9 HWDELIPDALGL-IFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSD 67
Query: 80 KLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLSET 139
L + I RS GSL +S+ D I IA L+ +++ +++ +
Sbjct: 68 HLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGVVNV 126
Query: 140 VKKLPLLEEFEISFS-PLSKDTLELMGKCCPHLKVLKFNMRGLKGFEC---DDEAFAIAK 195
+KL L ++S+ + + ++ +GK C L+ NM L DDEA+AIA
Sbjct: 127 AEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIAN 186
Query: 196 TMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSGRLKERCLKQIKDLRL 255
TMP+L L++ +R++ G++ IL C LE L+LR C +V L + + +K L
Sbjct: 187 TMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLG- 245
Query: 256 PGDVSEVPKYVDVEGCGCGCED------DHKGWHFLK 286
P + D E C C D D+ W F +
Sbjct: 246 PRVIGFYDMINDWEDC---CSDYFSDGSDYLAWEFFE 279
>AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 125/277 (45%), Gaps = 18/277 (6%)
Query: 22 NWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTID--LTNHSHHAGS 79
+W ELIP L I + L + E+ T VC W + P W+ ID L ++ H
Sbjct: 9 HWDELIPDALGL-IFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSD 67
Query: 80 KLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLSET 139
L + I RS GSL +S+ D I IA L+ +++ +++ +
Sbjct: 68 HLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGVVNV 126
Query: 140 VKKLPLLEEFEISFS-PLSKDTLELMGKCCPHLKVLKFNMRGLKGFEC---DDEAFAIAK 195
+KL L ++S+ + + ++ +GK C L+ NM L DDEA+AIA
Sbjct: 127 AEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIAN 186
Query: 196 TMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSGRLKERCLKQIKDLRL 255
TMP+L L++ +R++ G++ IL C LE L+LR C +V L + + +K L
Sbjct: 187 TMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLG- 245
Query: 256 PGDVSEVPKYVDVEGCGCGCED------DHKGWHFLK 286
P + D E C C D D+ W F +
Sbjct: 246 PRVIGFYDMINDWEDC---CSDYFSDGSDYLAWEFFE 279
>AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 125/277 (45%), Gaps = 18/277 (6%)
Query: 22 NWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTID--LTNHSHHAGS 79
+W ELIP L I + L + E+ T VC W + P W+ ID L ++ H
Sbjct: 9 HWDELIPDALGL-IFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSD 67
Query: 80 KLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLSET 139
L + I RS GSL +S+ D I IA L+ +++ +++ +
Sbjct: 68 HLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGVVNV 126
Query: 140 VKKLPLLEEFEISFS-PLSKDTLELMGKCCPHLKVLKFNMRGLKGFEC---DDEAFAIAK 195
+KL L ++S+ + + ++ +GK C L+ NM L DDEA+AIA
Sbjct: 127 AEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIAN 186
Query: 196 TMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSGRLKERCLKQIKDLRL 255
TMP+L L++ +R++ G++ IL C LE L+LR C +V L + + +K L
Sbjct: 187 TMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLG- 245
Query: 256 PGDVSEVPKYVDVEGCGCGCED------DHKGWHFLK 286
P + D E C C D D+ W F +
Sbjct: 246 PRVIGFYDMINDWEDC---CSDYFSDGSDYLAWEFFE 279
>AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 125/277 (45%), Gaps = 18/277 (6%)
Query: 22 NWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTID--LTNHSHHAGS 79
+W ELIP L I + L + E+ T VC W + P W+ ID L ++ H
Sbjct: 9 HWDELIPDALGL-IFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSD 67
Query: 80 KLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLSET 139
L + I RS GSL +S+ D I IA L+ +++ +++ +
Sbjct: 68 HLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGVVNV 126
Query: 140 VKKLPLLEEFEISFS-PLSKDTLELMGKCCPHLKVLKFNMRGLKGFEC---DDEAFAIAK 195
+KL L ++S+ + + ++ +GK C L+ NM L DDEA+AIA
Sbjct: 127 AEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIAN 186
Query: 196 TMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSGRLKERCLKQIKDLRL 255
TMP+L L++ +R++ G++ IL C LE L+LR C +V L + + +K L
Sbjct: 187 TMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLG- 245
Query: 256 PGDVSEVPKYVDVEGCGCGCED------DHKGWHFLK 286
P + D E C C D D+ W F +
Sbjct: 246 PRVIGFYDMINDWEDC---CSDYFSDGSDYLAWEFFE 279
>AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 125/277 (45%), Gaps = 18/277 (6%)
Query: 22 NWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTID--LTNHSHHAGS 79
+W ELIP L I + L + E+ T VC W + P W+ ID L ++ H
Sbjct: 9 HWDELIPDALGL-IFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSNRFHQSD 67
Query: 80 KLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLSET 139
L + I RS GSL +S+ D I IA L+ +++ +++ +
Sbjct: 68 HLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS-GLTNSGVVNV 126
Query: 140 VKKLPLLEEFEISFS-PLSKDTLELMGKCCPHLKVLKFNMRGLKGFEC---DDEAFAIAK 195
+KL L ++S+ + + ++ +GK C L+ NM L DDEA+AIA
Sbjct: 127 AEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDEAYAIAN 186
Query: 196 TMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSGRLKERCLKQIKDLRL 255
TMP+L L++ +R++ G++ IL C LE L+LR C +V L + + +K L
Sbjct: 187 TMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPDMKVLG- 245
Query: 256 PGDVSEVPKYVDVEGCGCGCED------DHKGWHFLK 286
P + D E C C D D+ W F +
Sbjct: 246 PRVIGFYDMINDWEDC---CSDYFSDGSDYLAWEFFE 279
>AT4G30640.1 | Symbols: | RNI-like superfamily protein |
chr4:14952670-14953682 FORWARD LENGTH=301
Length = 301
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 31/248 (12%)
Query: 21 PNWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDLTNH------- 73
P+W EL E I ++L + + LV W+ C +P DL
Sbjct: 18 PDWSELT-RECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFPES 76
Query: 74 ----SHHAGSKLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCW 129
+ K+ F ++RS G L +I I CT+ L A+ +L + + NC
Sbjct: 77 INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIR-HCTERSLSYAAERCPNLEVLWIKNCP 135
Query: 130 EISDEQLSETVKKLPLLEEFEISFS-PLSKDTLELMGKCCPHLKVLKFNMRGLKGFEC-- 186
++D + + P L E +IS+S ++ ++L +G+ C +LK+LK N+ G
Sbjct: 136 NVTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPT 195
Query: 187 ---------------DDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLR 231
+ EA I K M QL HL++ + LT GL ++ GC +LE +DLR
Sbjct: 196 IVAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLR 255
Query: 232 ACSNVVLS 239
C ++ S
Sbjct: 256 GCISLTRS 263
>AT3G48880.2 | Symbols: | RNI-like superfamily protein |
chr3:18127873-18129008 FORWARD LENGTH=309
Length = 309
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 25/236 (10%)
Query: 23 WLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDLTN---------- 72
W EL ++ RI K +FE+ + + VC W C +P+ W+T+DL+N
Sbjct: 13 WEEL-DTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMRSSFIKIPL 71
Query: 73 --------HSHHAGSKLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMR 124
S A +++LK ++ S +L F +D+ L A+ LRR+
Sbjct: 72 EPYVYVERRSDEALTRILKLSMNLSGGSTRTL-IFHFNLFLSDDQLTYTAERCPGLRRVV 130
Query: 125 LLNCWEISDEQLSETVKKLPLLEEFEISFSPLSKDTLELMGKCCPHLKVLKFNMRGLKGF 184
L I + + ++ LE + L + K C + K LK M + F
Sbjct: 131 LPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKI-MGPFEVF 189
Query: 185 ECDDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSG 240
+ + +P + L + + + L+ ILDG P LE L++ V SG
Sbjct: 190 FAN----TLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSG 241
>AT3G48880.1 | Symbols: | RNI-like superfamily protein |
chr3:18127873-18129008 FORWARD LENGTH=309
Length = 309
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 25/236 (10%)
Query: 23 WLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDLTN---------- 72
W EL ++ RI K +FE+ + + VC W C +P+ W+T+DL+N
Sbjct: 13 WEEL-DTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMRSSFIKIPL 71
Query: 73 --------HSHHAGSKLLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMR 124
S A +++LK ++ S +L F +D+ L A+ LRR+
Sbjct: 72 EPYVYVERRSDEALTRILKLSMNLSGGSTRTL-IFHFNLFLSDDQLTYTAERCPGLRRVV 130
Query: 125 LLNCWEISDEQLSETVKKLPLLEEFEISFSPLSKDTLELMGKCCPHLKVLKFNMRGLKGF 184
L I + + ++ LE + L + K C + K LK M + F
Sbjct: 131 LPAWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKI-MGPFEVF 189
Query: 185 ECDDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSG 240
+ + +P + L + + + L+ ILDG P LE L++ V SG
Sbjct: 190 FAN----TLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSG 241
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 106 TDEILQSIADSGSHLRRMRLLNCWEISDEQLSETVKKLPLLEEFEISF-SPLSKDTLELM 164
TD L I++ LR + L NC I+D L+ + L LL+ ++S+ LS L +
Sbjct: 86 TDSDLAVISEGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAV 145
Query: 165 GKCCPHLKVLKFNMRGLKGFECDDEAFAIAKTMPQLCHLQLLG-NRLTNNGLIAILDGCP 223
+ C L+ L ++ G + F D+ ++++ L L L G +T++GL ++ GC
Sbjct: 146 AEGCHDLRAL--HLAGCR-FITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCR 202
Query: 224 HLESLDLRACSNVVLSG--RLKERCLKQIKDLRL 255
++SLD+ CSNV +G + + C +K L+L
Sbjct: 203 KIKSLDINKCSNVGDAGVSSVAKACASSLKTLKL 236
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 29/236 (12%)
Query: 27 IPVELAARILNKLGIFEIFTNASLVCPFW-----LKVCKNPLTWRTIDLTNHSHHAGSKL 81
IPVEL +ILN + + AS +C W L + + L+W ++ + K
Sbjct: 31 IPVELLMKILNLVDDRTVII-ASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKF 89
Query: 82 LKF---------------CLHAIERSCGSLEDISIEDFC--TDEILQSIADSGSHLRRMR 124
+K + AI C L+D+ + TD L S+A ++L ++
Sbjct: 90 VKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLN 149
Query: 125 LLNCWEISDEQLSETVKKLPLLEEFEIS--FSPLSKDTLELMGKCCPHLKVLKFNMRGLK 182
L C SD L+ + L+ + +S +TL+ +G+ C L+ L G
Sbjct: 150 LSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL---GWC 206
Query: 183 GFECDDEAFAIAKTMPQLCHLQLLGNRL-TNNGLIAILDGCPHLESLDLRACSNVV 237
DD ++A P L L L L T+ ++A+ + C HL SL L C N+
Sbjct: 207 ENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNIT 262
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 29/236 (12%)
Query: 27 IPVELAARILNKLGIFEIFTNASLVCPFW-----LKVCKNPLTWRTIDLTNHSHHAGSKL 81
IPVEL +ILN + + AS +C W L + + L+W ++ + K
Sbjct: 31 IPVELLMKILNLVDDRTVII-ASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKF 89
Query: 82 LKF---------------CLHAIERSCGSLEDISIEDFC--TDEILQSIADSGSHLRRMR 124
+K + AI C L+D+ + TD L S+A ++L ++
Sbjct: 90 VKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLN 149
Query: 125 LLNCWEISDEQLSETVKKLPLLEEFEIS--FSPLSKDTLELMGKCCPHLKVLKFNMRGLK 182
L C SD L+ + L+ + +S +TL+ +G+ C L+ L G
Sbjct: 150 LSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL---GWC 206
Query: 183 GFECDDEAFAIAKTMPQLCHLQLLGNRL-TNNGLIAILDGCPHLESLDLRACSNVV 237
DD ++A P L L L L T+ ++A+ + C HL SL L C N+
Sbjct: 207 ENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNIT 262
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 86 LHAIERSCGSLEDISIEDFCT---DEILQSIADSGSHLRRMRLLNCWEISDEQLSETVKK 142
L I + C SLE + + D C+ D + SIA +L+++ + C+EI ++ + K
Sbjct: 390 LQEIGKGCKSLEILHLVD-CSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKH 448
Query: 143 LPLLEEFEISF-SPLSKDTLELMGKCCPHLKVLKFNMRGLKGFECDDEAFAIAKTMPQLC 201
L E + F + L +GK C + + N+ G D AIA+ PQL
Sbjct: 449 CKSLTELSLRFCDKVGNKALIAIGKGCS---LQQLNVSGCNQIS-DAGITAIARGCPQLT 504
Query: 202 HLQLLGNRLTNNG---LIAILDGCPHLESLDLRACSNVVLSG 240
HL + + L N G L + +GCP L+ L L C ++ +G
Sbjct: 505 HLDI--SVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNG 544
>AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein |
chr1:7497479-7499386 FORWARD LENGTH=360
Length = 360
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 29/236 (12%)
Query: 27 IPVELAARILNKLGIFEIFTNASLVCPFW------------LKVCKNPLTWRTIDL---- 70
IPVEL RIL+ + + AS VC W L C N + + L
Sbjct: 31 IPVELLMRILSLVDDRNVIV-ASGVCTGWRDAISFGLTRLRLSWCNNNMNSLVLSLVPKF 89
Query: 71 ----TNHSHHAGSKLLKFCLHAIERSCGSLE--DISIEDFCTDEILQSIADSGSHLRRMR 124
T + +L + AI C L+ D+S TD L ++A L ++
Sbjct: 90 VKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLN 149
Query: 125 LLNCWEISDEQLSETVKKLPLLEEFEIS--FSPLSKDTLELMGKCCPHLKVLKFNMRGLK 182
L C SD ++ + L+ + ++ + LE +G C ++ L G
Sbjct: 150 LSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNL---GWC 206
Query: 183 GFECDDEAFAIAKTMPQLCHLQLLGNRL-TNNGLIAILDGCPHLESLDLRACSNVV 237
DD ++A P L L L G L T+ ++A+ D C HL SL L C N+
Sbjct: 207 ENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWCVHLRSLGLYYCRNIT 262