Miyakogusa Predicted Gene
- Lj0g3v0159789.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0159789.1 tr|G7IA59|G7IA59_MEDTR DEAD-box ATP-dependent RNA
helicase OS=Medicago truncatula GN=MTR_1g061970 PE,77.34,0,seg,NULL;
DEAD,DNA/RNA helicase, DEAD/DEAH box type, N-terminal;
Helicase_C,Helicase, C-terminal; P-,CUFF.9911.1
(478 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 566 e-161
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 214 1e-55
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 205 6e-53
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 202 4e-52
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 202 4e-52
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 201 1e-51
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 199 3e-51
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 197 1e-50
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 195 7e-50
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 192 4e-49
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 192 4e-49
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 191 8e-49
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 191 8e-49
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 189 3e-48
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 184 2e-46
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 169 5e-42
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 169 5e-42
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 152 5e-37
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 144 1e-34
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 142 4e-34
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 140 2e-33
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 140 2e-33
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 140 2e-33
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 140 2e-33
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 140 2e-33
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 139 3e-33
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 139 4e-33
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 138 7e-33
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 137 1e-32
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 136 3e-32
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 136 3e-32
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 135 6e-32
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 134 1e-31
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 134 2e-31
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 133 3e-31
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 133 3e-31
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 133 3e-31
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 133 3e-31
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 133 3e-31
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 132 4e-31
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 132 7e-31
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 132 7e-31
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 129 4e-30
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 125 5e-29
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 125 5e-29
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 125 6e-29
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 125 8e-29
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 123 2e-28
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 120 2e-27
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 117 1e-26
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 113 3e-25
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 113 4e-25
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 112 4e-25
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 109 3e-24
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 108 6e-24
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 106 4e-23
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 104 1e-22
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 104 1e-22
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 103 3e-22
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 103 3e-22
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 103 4e-22
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 102 4e-22
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 100 2e-21
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 99 8e-21
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 96 4e-20
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 96 6e-20
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 94 2e-19
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 89 8e-18
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 87 3e-17
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 82 6e-16
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 77 2e-14
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 71 2e-12
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 67 3e-11
AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 60 3e-09
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 59 5e-09
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 59 7e-09
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 59 7e-09
AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosph... 59 1e-08
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 566 bits (1458), Expect = e-161, Method: Compositional matrix adjust.
Identities = 281/448 (62%), Positives = 348/448 (77%), Gaps = 9/448 (2%)
Query: 33 LDGLAIDETXXXXXXXXXXXXXNIQAVSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQ 92
L+ L+I E NI+AV+SGDTPYTSA+ FEDL+LSPEL+KGLYVEMKF+
Sbjct: 54 LNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFE 113
Query: 93 KPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRE 152
KPSKIQ ISLPMI++PPH+ LIAQAHNGSGKTTCFVLGMLSRVDP L+ PQALCICPTRE
Sbjct: 114 KPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRE 173
Query: 153 LAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKK 212
LA QN+EVL+KMGK+TGI++E AVP +R + PV AHVVIGTPGT+KKW++FK+
Sbjct: 174 LANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMAFKR 233
Query: 213 LGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXX 272
LG+ LKILVFDEAD MLA DGF+DDSL+IMK+I ++N QVLLFSAT
Sbjct: 234 LGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVAR 293
Query: 273 XXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRN 332
NQLFV++E+L+LD+VKQYKV C E +KIEVI+D I E G ++GQTIIFV+T+
Sbjct: 294 TVKDP-NQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELG-DIGQTIIFVKTKA 351
Query: 333 SAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINL 392
SA+ +HKAL ++GY+VT++ G L DRDKIVKEF++ LTQVLI+TDV+ARGFDQQ++NL
Sbjct: 352 SAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNL 411
Query: 393 VINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDE-RDANIMSKIEN 451
V+NY+LP K+ EPDYEVYLHRVGRAGRFGRKGAVFNL+ D+ D +M KIE
Sbjct: 412 VVNYNLPTKYET-----GEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVMEKIEK 466
Query: 452 HFGTHVTEVRE-KSTEDFKACLKEAGLI 478
+F +V E++ S E++K+ LKEAGL+
Sbjct: 467 YFEANVKEIKSWNSEEEYKSALKEAGLL 494
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 221/395 (55%), Gaps = 35/395 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQ--GISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
+F+ + L P+L++G+Y F+KPS IQ GI +P D+I QA +G+GKT F
Sbjct: 42 SFDAMELQPDLLRGIYA-YGFEKPSAIQQRGI-IPFC---KGLDVIQQAQSGTGKTATFC 96
Query: 129 LGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINK 188
G+L ++D L QAL + PTRELA Q +V+R +G Y G+ ++ V S + +
Sbjct: 97 SGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTS-----VRE 151
Query: 189 RPPVM---AHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKE 245
V+ HVV+GTPG + + + L +K+ V DEAD+ML+ GF+D +I
Sbjct: 152 DQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSR-GFKD---QIYDI 207
Query: 246 IEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELS 305
+ L S QV +FSAT ++ V+++EL+L+ +KQ+ V E
Sbjct: 208 FQLLPSKVQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFYVNVDKEEW 266
Query: 306 KIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVK 365
K+E + D ++E + Q++IFV TR L + + V+A G ++ RD I++
Sbjct: 267 KLETLCD-LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 324
Query: 366 EFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAG 425
EFR G ++VLI+TD+LARG D QQ++LVIN+DLP +PE YLHR+GR+G
Sbjct: 325 EFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPT--------QPEN----YLHRIGRSG 372
Query: 426 RFGRKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
RFGRKG N ++ E D +M+ I+ + V E+
Sbjct: 373 RFGRKGVAINFMTSE-DERMMADIQRFYNVVVEEL 406
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 205 bits (521), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 216/403 (53%), Gaps = 32/403 (7%)
Query: 60 SSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHN 119
+ G P TS F D+ + ++++G+Y E F+KPS IQ ++ IL RD+IAQA +
Sbjct: 28 TDGIEPITS---FNDMGIKEDVLRGVY-EYGFEKPSAIQQRAVMPILQG--RDVIAQAQS 81
Query: 120 GSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMD 179
G+GKT+ L + VD + QAL + PTRELA Q + ++ +G + I + + +
Sbjct: 82 GTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGN 141
Query: 180 S--RDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQD 237
S D+ ++ HVV GTPG + I + L +K+L+ DE+D+ML+ GF+D
Sbjct: 142 SVGEDI----RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSR-GFKD 196
Query: 238 DSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYK 297
+I L QV L SAT ++ V+++EL+L+ +KQ+
Sbjct: 197 ---QIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEP-VKILVKRDELTLEGIKQFF 252
Query: 298 VRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNN 357
V E K + + D + + Q +IF T+ L + + + V+++ G +
Sbjct: 253 VAVEKEEWKFDTLCD--LYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQ 310
Query: 358 EDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVY 417
++RD I+ EFR G ++VLI+TDV ARG D QQ++LVINYDLP + E+Y
Sbjct: 311 KERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLP------------NNRELY 358
Query: 418 LHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
+HR+GR+GRFGRKG N + + D I+ IE ++ T + E+
Sbjct: 359 IHRIGRSGRFGRKGVAINFVKSD-DIKILRDIEQYYSTQIDEM 400
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 213/392 (54%), Gaps = 29/392 (7%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQ--GISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
+F+ + L L++G+Y F+KPS IQ GI +P D+I QA +G+GKT F
Sbjct: 40 SFDAMGLQENLLRGIYA-YGFEKPSAIQQRGI-VPFC---KGLDVIQQAQSGTGKTATFC 94
Query: 129 LGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINK 188
G+L ++D L QAL + PTRELA Q +V+R +G Y G+ V S V +
Sbjct: 95 SGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS--VREDQR 152
Query: 189 RPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK 248
HVV+GTPG + + + L +K+ V DEAD+ML+ GF+D +I +
Sbjct: 153 ILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR-GFKD---QIYDIFQL 208
Query: 249 LNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIE 308
L QV +FSAT ++ V+++EL+L+ +KQ+ V E K+E
Sbjct: 209 LPPKIQVGVFSATMPPEALEITRKFMSKP-VRILVKRDELTLEGIKQFYVNVEKEEWKLE 267
Query: 309 VIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFR 368
+ D ++E + Q++IFV TR L + + V+A G ++ RD I++EFR
Sbjct: 268 TLCD-LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 325
Query: 369 DGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFG 428
G ++VLI+TD+LARG D QQ++LVIN+DLP +PE YLHR+GR+GRFG
Sbjct: 326 SGSSRVLITTDLLARGIDVQQVSLVINFDLPT--------QPEN----YLHRIGRSGRFG 373
Query: 429 RKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
RKG N ++ + D ++ I+ + V E+
Sbjct: 374 RKGVAINFVTRD-DERMLFDIQKFYNVVVEEL 404
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 213/392 (54%), Gaps = 29/392 (7%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQ--GISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
+F+ + L L++G+Y F+KPS IQ GI +P D+I QA +G+GKT F
Sbjct: 30 SFDAMGLQENLLRGIYA-YGFEKPSAIQQRGI-VPFC---KGLDVIQQAQSGTGKTATFC 84
Query: 129 LGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINK 188
G+L ++D L QAL + PTRELA Q +V+R +G Y G+ V S V +
Sbjct: 85 SGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS--VREDQR 142
Query: 189 RPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK 248
HVV+GTPG + + + L +K+ V DEAD+ML+ GF+D +I +
Sbjct: 143 ILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR-GFKD---QIYDIFQL 198
Query: 249 LNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIE 308
L QV +FSAT ++ V+++EL+L+ +KQ+ V E K+E
Sbjct: 199 LPPKIQVGVFSATMPPEALEITRKFMSKP-VRILVKRDELTLEGIKQFYVNVEKEEWKLE 257
Query: 309 VIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFR 368
+ D ++E + Q++IFV TR L + + V+A G ++ RD I++EFR
Sbjct: 258 TLCD-LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 315
Query: 369 DGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFG 428
G ++VLI+TD+LARG D QQ++LVIN+DLP +PE YLHR+GR+GRFG
Sbjct: 316 SGSSRVLITTDLLARGIDVQQVSLVINFDLPT--------QPEN----YLHRIGRSGRFG 363
Query: 429 RKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
RKG N ++ + D ++ I+ + V E+
Sbjct: 364 RKGVAINFVTRD-DERMLFDIQKFYNVVVEEL 394
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 206/375 (54%), Gaps = 30/375 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQ--GISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
+F+ + L L++G+Y F+KPS IQ GI +P D+I QA +G+GKT F
Sbjct: 40 SFDAMGLQENLLRGIYA-YGFEKPSAIQQRGI-VPFC---KGLDVIQQAQSGTGKTATFC 94
Query: 129 LGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINK 188
G+L ++D L QAL + PTRELA Q +V+R +G Y G+ V S V +
Sbjct: 95 SGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS--VREDQR 152
Query: 189 RPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK 248
HVV+GTPG + + + L +K+ V DEAD+ML+ GF+D +I +
Sbjct: 153 ILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR-GFKD---QIYDIFQL 208
Query: 249 LNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIE 308
L QV +FSAT ++ V+++EL+L+ +KQ+ V E K+E
Sbjct: 209 LPPKIQVGVFSATMPPEALEITRKFMSKP-VRILVKRDELTLEGIKQFYVNVEKEEWKLE 267
Query: 309 VIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFR 368
+ D ++E + Q++IFV TR L + + V+A G ++ RD I++EFR
Sbjct: 268 TLCD-LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 325
Query: 369 DGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFG 428
G ++VLI+TD+LARG D QQ++LVIN+DLP +PE YLHR+GR+GRFG
Sbjct: 326 SGSSRVLITTDLLARGIDVQQVSLVINFDLPT--------QPEN----YLHRIGRSGRFG 373
Query: 429 RKGAVFNLIS--DER 441
RKG N ++ DER
Sbjct: 374 RKGVAINFVTRDDER 388
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 213/392 (54%), Gaps = 29/392 (7%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQ--GISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
+F+ + L L++G+Y F+KPS IQ GI +P D+I QA +G+GKT F
Sbjct: 40 SFDAMGLQENLLRGIYA-YGFEKPSAIQQRGI-VPFC---KGLDVIQQAQSGTGKTATFC 94
Query: 129 LGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINK 188
G+L ++D L QAL + PTRELA Q +V+R +G Y G+ V S V +
Sbjct: 95 SGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTS--VREDQR 152
Query: 189 RPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK 248
HVV+GTPG + + + L +K+ V DEAD+ML+ GF+D +I +
Sbjct: 153 ILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSR-GFKD---QIYDIFQL 208
Query: 249 LNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIE 308
L QV +FSAT ++ V+++EL+L+ +KQ+ V E K+E
Sbjct: 209 LPPKIQVGVFSATMPPEALEITRKFMSKP-VRILVKRDELTLEGIKQFYVNVEKEDWKLE 267
Query: 309 VIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFR 368
+ D ++E + Q++IFV TR L + + V+A G ++ RD I++EFR
Sbjct: 268 TLCD-LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 325
Query: 369 DGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFG 428
G ++VLI+TD+LARG D QQ++LVIN+DLP +PE YLHR+GR+GRFG
Sbjct: 326 SGSSRVLITTDLLARGIDVQQVSLVINFDLPT--------QPEN----YLHRIGRSGRFG 373
Query: 429 RKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
RKG N ++ + D ++ I+ + V E+
Sbjct: 374 RKGVAINFVTLD-DQRMLFDIQKFYNVVVEEL 404
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 211/392 (53%), Gaps = 34/392 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQ--GISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
+F+ + L L++G F+KPS IQ GI +P D+I QA +G+GKT F
Sbjct: 40 SFDAMGLQENLLRG------FEKPSAIQQRGI-VPFC---KGLDVIQQAQSGTGKTATFC 89
Query: 129 LGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINK 188
G+L ++D L QAL + PTRELA Q +V+R +G Y G+ V S V +
Sbjct: 90 SGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS--VREDQR 147
Query: 189 RPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK 248
HVV+GTPG + + + L +K+ V DEAD+ML+ GF+D +I +
Sbjct: 148 ILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR-GFKD---QIYDIFQL 203
Query: 249 LNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIE 308
L QV +FSAT ++ V+++EL+L+ +KQ+ V E K+E
Sbjct: 204 LPPKIQVGVFSATMPPEALEITRKFMSKP-VRILVKRDELTLEGIKQFYVNVEKEEWKLE 262
Query: 309 VIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFR 368
+ D ++E + Q++IFV TR L + + V+A G ++ RD I++EFR
Sbjct: 263 TLCD-LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 320
Query: 369 DGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFG 428
G ++VLI+TD+LARG D QQ++LVIN+DLP +PE YLHR+GR+GRFG
Sbjct: 321 SGSSRVLITTDLLARGIDVQQVSLVINFDLPT--------QPEN----YLHRIGRSGRFG 368
Query: 429 RKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
RKG N ++ + D ++ I+ + V E+
Sbjct: 369 RKGVAINFVTRD-DERMLFDIQKFYNVVVEEL 399
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 195 bits (495), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 211/392 (53%), Gaps = 34/392 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQ--GISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
+F+ + L L++G F+KPS IQ GI +P D+I QA +G+GKT F
Sbjct: 40 SFDAMGLQENLLRG------FEKPSAIQQRGI-VPFC---KGLDVIQQAQSGTGKTATFC 89
Query: 129 LGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINK 188
G+L ++D L QAL + PTRELA Q +V+R +G Y G+ V S V +
Sbjct: 90 SGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTS--VREDQR 147
Query: 189 RPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK 248
HVV+GTPG + + + L +K+ V DEAD+ML+ GF+D +I +
Sbjct: 148 ILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSR-GFKD---QIYDIFQL 203
Query: 249 LNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIE 308
L QV +FSAT ++ V+++EL+L+ +KQ+ V E K+E
Sbjct: 204 LPPKIQVGVFSATMPPEALEITRKFMSKP-VRILVKRDELTLEGIKQFYVNVEKEDWKLE 262
Query: 309 VIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFR 368
+ D ++E + Q++IFV TR L + + V+A G ++ RD I++EFR
Sbjct: 263 TLCD-LYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 320
Query: 369 DGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFG 428
G ++VLI+TD+LARG D QQ++LVIN+DLP +PE YLHR+GR+GRFG
Sbjct: 321 SGSSRVLITTDLLARGIDVQQVSLVINFDLPT--------QPEN----YLHRIGRSGRFG 368
Query: 429 RKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
RKG N ++ + D ++ I+ + V E+
Sbjct: 369 RKGVAINFVTLD-DQRMLFDIQKFYNVVVEEL 399
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 210/413 (50%), Gaps = 53/413 (12%)
Query: 61 SGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNG 120
+ D T FED L +L+KG+Y E F+KPS IQ S+P+ L+ D++A+A NG
Sbjct: 115 TADVTATKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQEESIPIALT--GSDILARAKNG 171
Query: 121 SGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS 180
+GKT F + +L ++DP QA+ + PTRELA+Q +V +++ KY I S
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 181 -RDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLK---ILVFDEADQMLAEDGFQ 236
RD I +P H+++GTPG I + K GV LK +LV DEAD++L+ + FQ
Sbjct: 232 LRDDIMRLHQP---VHLLVGTPGRI---LDLTKKGVCVLKDCAMLVMDEADKLLSAE-FQ 284
Query: 237 DDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY 296
+ + I+ L Q L+FSAT + + ++L+L V QY
Sbjct: 285 PS---LEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY--VINLMDQLTLMGVTQY 339
Query: 297 --------KVRCLDEL-SKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYE 347
KV CL+ L SK+++ Q+IIF + N ++L K + +LGY
Sbjct: 340 YAFVEERQKVHCLNTLFSKLQI------------NQSIIFCNSVNRVELLAKKITELGYS 387
Query: 348 VTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYT 407
I + + R+++ EFR+G + L+ TD+ RG D Q +N+VIN+D P
Sbjct: 388 CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTS----- 442
Query: 408 REPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
E YLHRVGR+GRFG G NL++ E D M + E GT + +
Sbjct: 443 -------ESYLHRVGRSGRFGHLGLAVNLVTYE-DRFKMYQTEQELGTEIKPI 487
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 210/413 (50%), Gaps = 53/413 (12%)
Query: 61 SGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNG 120
+ D T FED L +L+KG+Y E F+KPS IQ S+P+ L+ D++A+A NG
Sbjct: 115 TADVTATKGNEFEDYFLKRDLLKGIY-EKGFEKPSPIQEESIPIALT--GSDILARAKNG 171
Query: 121 SGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS 180
+GKT F + +L ++DP QA+ + PTRELA+Q +V +++ KY I S
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 181 -RDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLK---ILVFDEADQMLAEDGFQ 236
RD I +P H+++GTPG I + K GV LK +LV DEAD++L+ + FQ
Sbjct: 232 LRDDIMRLHQP---VHLLVGTPGRI---LDLTKKGVCVLKDCAMLVMDEADKLLSAE-FQ 284
Query: 237 DDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY 296
+ + I+ L Q L+FSAT + + ++L+L V QY
Sbjct: 285 PS---LEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY--VINLMDQLTLMGVTQY 339
Query: 297 --------KVRCLDEL-SKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYE 347
KV CL+ L SK+++ Q+IIF + N ++L K + +LGY
Sbjct: 340 YAFVEERQKVHCLNTLFSKLQI------------NQSIIFCNSVNRVELLAKKITELGYS 387
Query: 348 VTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYT 407
I + + R+++ EFR+G + L+ TD+ RG D Q +N+VIN+D P
Sbjct: 388 CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTS----- 442
Query: 408 REPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
E YLHRVGR+GRFG G NL++ E D M + E GT + +
Sbjct: 443 -------ESYLHRVGRSGRFGHLGLAVNLVTYE-DRFKMYQTEQELGTEIKPI 487
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 212/411 (51%), Gaps = 53/411 (12%)
Query: 63 DTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSG 122
D T FED L EL+ G+Y E F++PS IQ S+P+ L+ RD++A+A NG+G
Sbjct: 124 DVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALT--GRDILARAKNGTG 180
Query: 123 KTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS-R 181
KT F + +L ++D QA+ I PTRELA+Q +V +++GK+ I S +
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLK 240
Query: 182 DVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLK---ILVFDEADQMLAEDGFQDD 238
D I +P H+++GTPG I + K GV LK +LV DEAD++L+++ FQ
Sbjct: 241 DDIMRLYQP---VHLLVGTPGRI---LDLTKKGVCVLKDCSVLVMDEADKLLSQE-FQPS 293
Query: 239 SLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY-- 296
+ I L Q+L+FSAT + + +EL+L + Q+
Sbjct: 294 ---VEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY--VINLMDELTLKGITQFYA 348
Query: 297 ------KVRCLDEL-SKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVT 349
K+ CL+ L SK+++ Q+IIF + N ++L K + +LGY
Sbjct: 349 FVEERQKIHCLNTLFSKLQI------------NQSIIFCNSVNRVELLAKKITELGYSCF 396
Query: 350 AIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTRE 409
I + + R+++ +FR+G + L+ TD+ RG D Q +N+VIN+D P
Sbjct: 397 YIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP---------- 446
Query: 410 PEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
+ E YLHRVGR+GRFG G NLI+ E N+ +IE GT + ++
Sbjct: 447 --KNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLY-RIEQELGTEIKQI 494
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 212/411 (51%), Gaps = 53/411 (12%)
Query: 63 DTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSG 122
D T FED L EL+ G+Y E F++PS IQ S+P+ L+ RD++A+A NG+G
Sbjct: 124 DVTATKGNEFEDYFLKRELLMGIY-EKGFERPSPIQEESIPIALT--GRDILARAKNGTG 180
Query: 123 KTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS-R 181
KT F + +L ++D QA+ I PTRELA+Q +V +++GK+ I S +
Sbjct: 181 KTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLK 240
Query: 182 DVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLK---ILVFDEADQMLAEDGFQDD 238
D I +P H+++GTPG I + K GV LK +LV DEAD++L+++ FQ
Sbjct: 241 DDIMRLYQP---VHLLVGTPGRI---LDLTKKGVCVLKDCSVLVMDEADKLLSQE-FQPS 293
Query: 239 SLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY-- 296
+ I L Q+L+FSAT + + +EL+L + Q+
Sbjct: 294 ---VEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY--VINLMDELTLKGITQFYA 348
Query: 297 ------KVRCLDEL-SKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVT 349
K+ CL+ L SK+++ Q+IIF + N ++L K + +LGY
Sbjct: 349 FVEERQKIHCLNTLFSKLQI------------NQSIIFCNSVNRVELLAKKITELGYSCF 396
Query: 350 AIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTRE 409
I + + R+++ +FR+G + L+ TD+ RG D Q +N+VIN+D P
Sbjct: 397 YIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP---------- 446
Query: 410 PEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
+ E YLHRVGR+GRFG G NLI+ E N+ +IE GT + ++
Sbjct: 447 --KNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLY-RIEQELGTEIKQI 494
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 210/411 (51%), Gaps = 53/411 (12%)
Query: 63 DTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSG 122
D T FED L +L++G+Y E F+KPS IQ S+P+ L+ D++A+A NG+G
Sbjct: 147 DVTATKGNEFEDYFLKRDLLRGIY-EKGFEKPSPIQEESIPIALT--GSDILARAKNGTG 203
Query: 123 KTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS-R 181
KT F + L ++DP+ QA+ + PTRELA+Q +V +++ KY I S R
Sbjct: 204 KTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLR 263
Query: 182 DVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLK---ILVFDEADQMLAEDGFQDD 238
D I +P H+++GTPG I + K GV LK +LV DEAD++L+ + FQ
Sbjct: 264 DDIMRLYQP---VHLLVGTPGRI---LDLAKKGVCVLKDCAMLVMDEADKLLSVE-FQPS 316
Query: 239 SLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY-- 296
I + I+ L Q+L+FSAT + + ++L+L V QY
Sbjct: 317 ---IEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPY--IINLMDQLTLMGVTQYYA 371
Query: 297 ------KVRCLDEL-SKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVT 349
KV CL+ L SK+++ Q+IIF + N ++L K + +LGY
Sbjct: 372 FVEERQKVHCLNTLFSKLQI------------NQSIIFCNSVNRVELLAKKITELGYSCF 419
Query: 350 AIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTRE 409
I + + R+++ +FR+G + L+ TD+ RG D Q +N+VIN+D P
Sbjct: 420 YIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTS------- 472
Query: 410 PEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEV 460
E YLHRVGR+GRFG G NL++ E D M + E GT + +
Sbjct: 473 -----ESYLHRVGRSGRFGHLGLAVNLVTYE-DRFKMYQTEQELGTEIKPI 517
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 208/394 (52%), Gaps = 33/394 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
+F+D+ ++ ++++G+Y + ++KPS+IQ +L IL RD+IAQA +G+GKT+ +
Sbjct: 23 SFDDMGMNDKVLRGVY-DYGYKKPSEIQQRALVPILKG--RDVIAQAQSGTGKTSMIAIS 79
Query: 131 MLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS--RDVIPINK 188
+ V+ + Q L + P+RELA Q + ++ +G +T I + + S D+ K
Sbjct: 80 VCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDI----K 135
Query: 189 RPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEK 248
+ H V GTPG + I L +K+LV DE+D+ML++ G +D +I
Sbjct: 136 KLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSK-GLKD---QIYDVYRA 191
Query: 249 LNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIE 308
L QV L SAT ++ V+ +EL+L+ +KQY V E K +
Sbjct: 192 LPHDIQVCLISATLPQEILEMTEKFMTDP-VRILVKPDELTLEGIKQYYVDVDKEEWKFD 250
Query: 309 VIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFR 368
+ D + Q IIF TR L + + + V+++ G ++RD I+ +FR
Sbjct: 251 TLCD--LYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFR 308
Query: 369 DGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFG 428
++VLI++DV ARG D Q ++ VINYD+P P E+Y+HR+GRAGRFG
Sbjct: 309 SFKSRVLIASDVWARGIDVQTVSHVINYDIP--------NNP----ELYIHRIGRAGRFG 356
Query: 429 RKGAVFNLI--SDERDANIMSKIENHFGTHVTEV 460
R+G N + SD +D + IE H+GT + E+
Sbjct: 357 REGVAINFVKSSDMKD---LKDIERHYGTKIREM 387
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 55 NIQAVSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLI 114
N +AV G S+ F D L PEL++ + V+ F+ PS++Q +P + D+I
Sbjct: 32 NGEAVKKGYVGIHSSG-FRDFLLKPELLRAI-VDSGFEHPSEVQHECIPQAILG--MDVI 87
Query: 115 AQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKY---TGIS 171
QA +G GKT FVL L +++P AL +C TRELA Q + Y T +S
Sbjct: 88 CQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVS 147
Query: 172 S-ECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQML 230
V + + N+ P H+V+GTPG + K L + ++ + DE D+ML
Sbjct: 148 VFYGGVNIKIHKDLLKNECP----HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Query: 231 AEDGFQDDSLRIMKEIEKLN-SGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKE-EL 288
D R ++EI K+ QV++FSAT +++V E +L
Sbjct: 204 E----SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKL 258
Query: 289 SLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEV 348
+L + Q+ ++ L E+ K + D + + + Q +IFV++ + A L+K LV+ +
Sbjct: 259 TLHGLVQHYIK-LSEMEKNRKLNDLL--DALDFNQVVIFVKSVSRAAELNKLLVECNFPS 315
Query: 349 TAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR 408
I ++ E+R K F++G ++L++TD++ RG D +++N+VINYD+P
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP--------- 366
Query: 409 EPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEVREK 463
+ YLHRVGRAGRFG KG ++ D+ ++++++ F + E+ E+
Sbjct: 367 ---DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQ 418
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 209/415 (50%), Gaps = 34/415 (8%)
Query: 55 NIQAVSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLI 114
N +AV G S+ F D L PEL++ + V+ F+ PS++Q +P + D+I
Sbjct: 32 NGEAVKKGYVGIHSSG-FRDFLLKPELLRAI-VDSGFEHPSEVQHECIPQAILG--MDVI 87
Query: 115 AQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKY---TGIS 171
QA +G GKT FVL L +++P AL +C TRELA Q + Y T +S
Sbjct: 88 CQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVS 147
Query: 172 S-ECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQML 230
V + + N+ P H+V+GTPG + K L + ++ + DE D+ML
Sbjct: 148 VFYGGVNIKIHKDLLKNECP----HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Query: 231 AEDGFQDDSLRIMKEIEKLN-SGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKE-EL 288
D R ++EI K+ QV++FSAT +++V E +L
Sbjct: 204 E----SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKL 258
Query: 289 SLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEV 348
+L + Q+ ++ L E+ K + D + + + Q +IFV++ + A L+K LV+ +
Sbjct: 259 TLHGLVQHYIK-LSEMEKNRKLNDLL--DALDFNQVVIFVKSVSRAAELNKLLVECNFPS 315
Query: 349 TAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR 408
I ++ E+R K F++G ++L++TD++ RG D +++N+VINYD+P
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP--------- 366
Query: 409 EPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEVREK 463
+ YLHRVGRAGRFG KG ++ D+ ++++++ F + E+ E+
Sbjct: 367 ---DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQ 418
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 181/358 (50%), Gaps = 30/358 (8%)
Query: 112 DLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKY---T 168
D+I QA +G GKT FVL L +++P AL +C TRELA Q + Y T
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 169 GISS-ECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEAD 227
+S V + + N+ P H+V+GTPG + K L + ++ + DE D
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNECP----HIVVGTPGRVLALAREKDLSLKNVRHFILDECD 117
Query: 228 QMLAEDGFQDDSLRIMKEIEKLN-SGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKE 286
+ML D R ++EI K+ QV++FSAT +++V E
Sbjct: 118 KMLE----SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDE 172
Query: 287 -ELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLG 345
+L+L + Q+ ++ L E+ K + D + + + Q +IFV++ + A L+K LV+
Sbjct: 173 AKLTLHGLVQHYIK-LSEMEKNRKLNDLL--DALDFNQVVIFVKSVSRAAELNKLLVECN 229
Query: 346 YEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAE 405
+ I ++ E+R K F++G ++L++TD++ RG D +++N+VINYD+P
Sbjct: 230 FPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP------ 283
Query: 406 YTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEVREK 463
+ YLHRVGRAGRFG KG ++ D+ ++++++ F + E+ E+
Sbjct: 284 ------DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQ 335
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 196/413 (47%), Gaps = 34/413 (8%)
Query: 61 SGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNG 120
S DT TSA FE L L+ V+ E+ +KP+ +Q +P IL+ RD++ A G
Sbjct: 51 SSDT--TSATNFEGLGLAEWAVETCK-ELGMRKPTPVQTHCVPKILA--GRDVLGLAQTG 105
Query: 121 SGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS 180
SGKT F L +L R+ AL + PTRELA Q E + +G + ++ C+V +
Sbjct: 106 SGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALG--SCLNLRCSVIVGG 163
Query: 181 RDVIPINKRPPVMAHVVIGTPGTIKKWISFKK---LGVARLKILVFDEADQMLAEDGFQD 237
D++ H+VI TPG IK + +R K LV DEAD++L + GFQD
Sbjct: 164 MDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVL-DVGFQD 222
Query: 238 DSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEEL-SLDAVKQY 296
+ I + + K Q LLFSAT + + E L ++D + Q
Sbjct: 223 ELRTIFQCLPK---SRQTLLFSATMTSNLQALLEHSSNKAY--FYEAYEGLKTVDTLTQQ 277
Query: 297 KVRCLDELSKIEVIRDYIFENGENMG--QTIIFVRTRNSAKMLHKALVDLGYEVTAIQGA 354
+ ++ E+ +I E+ G +IFV T + + L L +L E A+
Sbjct: 278 FI--FEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSL 335
Query: 355 LNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDY 414
+ R + +F+ G +L++TDV +RG D ++LVINYD+P R+P
Sbjct: 336 NSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIP--------RDPRD-- 385
Query: 415 EVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEVREKSTED 467
Y+HRVGR R GR G ++I+ E D ++ KIE G + +K D
Sbjct: 386 --YVHRVGRTARAGRGGLAVSIIT-ETDVKLIHKIEEEVGKKMEPYNKKVITD 435
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 183/403 (45%), Gaps = 58/403 (14%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
+ +GD F+D+ P V E +P+ IQ LP+IL+ RD+I A
Sbjct: 135 IVNGDDIPPPIKNFKDMKF-PRPVLDTLKEKGIVQPTPIQVQGLPVILA--GRDMIGIAF 191
Query: 119 NGSGKTTCFVLGML------SRVDP--KLQAPQALCICPTRELAIQNIEVLRKM------ 164
GSGKT FVL M+ + P + P L +CP+RELA Q EV+ +
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVE 251
Query: 165 GKYTGISSE-CAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVF 223
Y + S C +D R + + KR H+V+ TPG +K ++ KK+ + + L
Sbjct: 252 AGYPPLRSLLCIGGIDMRSQLEVVKRG---VHIVVATPGRLKDMLAKKKMSLDACRYLTL 308
Query: 224 DEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFV 283
DEAD+ L + GF+DD I + + S Q LLFSAT Q+F
Sbjct: 309 DEADR-LVDLGFEDD---IREVFDHFKSQRQTLLFSATMPTKI-------------QIFA 351
Query: 284 RKEELSLDAVKQYKVRC--LDELSKIEVIRD-----YIFENGENMGQTI-IFVRTRNSAK 335
R + V + LD + ++E ++ Y+ E + + IF +
Sbjct: 352 RSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVD 411
Query: 336 MLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVIN 395
+H+ L+ G E AI G + EDR+ + F+ G VL++TDV ++G D I VIN
Sbjct: 412 DIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 471
Query: 396 YDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLIS 438
YD+P + E Y+HR+GR GR G+ G I+
Sbjct: 472 YDMPA------------EIENYVHRIGRTGRCGKTGIATTFIN 502
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 179/392 (45%), Gaps = 40/392 (10%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
VS G P +FE PEL++ + + F P+ IQ S P+ + RD++A A
Sbjct: 148 VSGGQVP-PPLMSFEATGFPPELLREV-LSAGFSAPTPIQAQSWPIAMQ--GRDIVAIAK 203
Query: 119 NGSGKTTCFVL-GMLS----RVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSE 173
GSGKT +++ G L R D ++ P L + PTRELA Q E K G+ + IS
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 174 C---AVPMDS--RDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQ 228
C P RD+ +R A +V+ TPG + + +++ + ++ LV DEAD+
Sbjct: 263 CLYGGAPKGPQLRDL----ER---GADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 315
Query: 229 MLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEEL 288
ML + GF+ +I+KEI Q L+++AT +EL
Sbjct: 316 ML-DMGFEPQIRKIVKEIPTKR---QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDEL 371
Query: 289 SLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEV 348
+ + + + K + + I + E + IIF T+ L + L +
Sbjct: 372 VANKSITQHIEVVAPMEKQRRL-EQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 349 TAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR 408
AI G + +RD ++ +FR G T VL++TDV ARG D + I V+NYD P
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN-------- 481
Query: 409 EPEPDYEVYLHRVGRAGRFGRKGAVFNLISDE 440
E Y+HR+GR GR G G F D+
Sbjct: 482 ----GVEDYVHRIGRTGRAGATGQAFTFFGDQ 509
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 179/392 (45%), Gaps = 40/392 (10%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
VS G P +FE PEL++ + + F P+ IQ S P+ + RD++A A
Sbjct: 148 VSGGQVP-PPLMSFEATGFPPELLREV-LSAGFSAPTPIQAQSWPIAMQ--GRDIVAIAK 203
Query: 119 NGSGKTTCFVL-GMLS----RVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSE 173
GSGKT +++ G L R D ++ P L + PTRELA Q E K G+ + IS
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 174 C---AVPMDS--RDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQ 228
C P RD+ +R A +V+ TPG + + +++ + ++ LV DEAD+
Sbjct: 263 CLYGGAPKGPQLRDL----ER---GADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 315
Query: 229 MLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEEL 288
ML + GF+ +I+KEI Q L+++AT +EL
Sbjct: 316 ML-DMGFEPQIRKIVKEIPTKR---QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDEL 371
Query: 289 SLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEV 348
+ + + + K + + I + E + IIF T+ L + L +
Sbjct: 372 VANKSITQHIEVVAPMEKQRRL-EQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 349 TAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR 408
AI G + +RD ++ +FR G T VL++TDV ARG D + I V+NYD P
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN-------- 481
Query: 409 EPEPDYEVYLHRVGRAGRFGRKGAVFNLISDE 440
E Y+HR+GR GR G G F D+
Sbjct: 482 ----GVEDYVHRIGRTGRAGATGQAFTFFGDQ 509
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 179/392 (45%), Gaps = 40/392 (10%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
VS G P +FE PEL++ + + F P+ IQ S P+ + RD++A A
Sbjct: 148 VSGGQVP-PPLMSFEATGFPPELLREV-LSAGFSAPTPIQAQSWPIAMQ--GRDIVAIAK 203
Query: 119 NGSGKTTCFVL-GMLS----RVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSE 173
GSGKT +++ G L R D ++ P L + PTRELA Q E K G+ + IS
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 174 C---AVPMDS--RDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQ 228
C P RD+ +R A +V+ TPG + + +++ + ++ LV DEAD+
Sbjct: 263 CLYGGAPKGPQLRDL----ER---GADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 315
Query: 229 MLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEEL 288
ML + GF+ +I+KEI Q L+++AT +EL
Sbjct: 316 ML-DMGFEPQIRKIVKEIPTKR---QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDEL 371
Query: 289 SLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEV 348
+ + + + K + + I + E + IIF T+ L + L +
Sbjct: 372 VANKSITQHIEVVAPMEKQRRL-EQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 349 TAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR 408
AI G + +RD ++ +FR G T VL++TDV ARG D + I V+NYD P
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN-------- 481
Query: 409 EPEPDYEVYLHRVGRAGRFGRKGAVFNLISDE 440
E Y+HR+GR GR G G F D+
Sbjct: 482 ----GVEDYVHRIGRTGRAGATGQAFTFFGDQ 509
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 179/392 (45%), Gaps = 40/392 (10%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
VS G P +FE PEL++ + + F P+ IQ S P+ + RD++A A
Sbjct: 148 VSGGQVP-PPLMSFEATGFPPELLREV-LSAGFSAPTPIQAQSWPIAMQ--GRDIVAIAK 203
Query: 119 NGSGKTTCFVL-GMLS----RVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSE 173
GSGKT +++ G L R D ++ P L + PTRELA Q E K G+ + IS
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCT 262
Query: 174 C---AVPMDS--RDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQ 228
C P RD+ +R A +V+ TPG + + +++ + ++ LV DEAD+
Sbjct: 263 CLYGGAPKGPQLRDL----ER---GADIVVATPGRLNDILEMRRISLRQISYLVLDEADR 315
Query: 229 MLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEEL 288
ML + GF+ +I+KEI Q L+++AT +EL
Sbjct: 316 ML-DMGFEPQIRKIVKEIPTKR---QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDEL 371
Query: 289 SLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEV 348
+ + + + K + + I + E + IIF T+ L + L +
Sbjct: 372 VANKSITQHIEVVAPMEKQRRL-EQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 349 TAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR 408
AI G + +RD ++ +FR G T VL++TDV ARG D + I V+NYD P
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN-------- 481
Query: 409 EPEPDYEVYLHRVGRAGRFGRKGAVFNLISDE 440
E Y+HR+GR GR G G F D+
Sbjct: 482 ----GVEDYVHRIGRTGRAGATGQAFTFFGDQ 509
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 176/376 (46%), Gaps = 31/376 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKT-----T 125
TFE L PE+++ L + F P+ IQ + P+ L RD++A A GSGKT
Sbjct: 436 TFESSGLPPEILREL-LSAGFPSPTPIQAQTWPIALQ--SRDIVAIAKTGSGKTLGYLIP 492
Query: 126 CFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIP 185
F+L R D + P L + PTRELA Q + + G+ + IS C + P
Sbjct: 493 AFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKG--P 549
Query: 186 INKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKE 245
K A +V+ TPG + + K + ++ +LV DEAD+ML + GF+ +I+ E
Sbjct: 550 QLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRML-DMGFEPQIRKIVNE 608
Query: 246 IEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLD-AVKQYKVRCLDEL 304
I Q L+++AT R +EL+ + A+ QY V + ++
Sbjct: 609 IPPRR---QTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQY-VEVVPQM 664
Query: 305 SKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIV 364
K E + I + E + IIF T+ L ++ V + I G +RD ++
Sbjct: 665 EK-ERRLEQILRSQERGSKVIIFCSTKRLCDHLARS-VGRHFGAVVIHGDKTQGERDWVL 722
Query: 365 KEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRA 424
+FR G + VLI+TDV ARG D + I +VINYD P E Y+HR+GR
Sbjct: 723 NQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPT------------GVEDYVHRIGRT 770
Query: 425 GRFGRKGAVFNLISDE 440
GR G G F +++
Sbjct: 771 GRAGATGVAFTFFTEQ 786
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 178/388 (45%), Gaps = 32/388 (8%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
VS G P +FE L EL++ +Y F PS IQ S P+ + +RD++A A
Sbjct: 151 VSGGQVP-PPLMSFEATGLPNELLREVY-SAGFSAPSPIQAQSWPIAMQ--NRDIVAIAK 206
Query: 119 NGSGKTTCFVLG---MLSRV--DPKLQAPQALCICPTRELAIQ-NIEVLRKMGKYTGISS 172
GSGKT +++ L R+ D ++ P L + PTRELA Q +E L K GK + IS
Sbjct: 207 TGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEAL-KFGKSSKIS- 263
Query: 173 ECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAE 232
CA P K +V+ TPG + + K++ + ++ LV DEAD+ML +
Sbjct: 264 -CACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRML-D 321
Query: 233 DGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDA 292
GF+ +I+ E+ Q L+++AT +EL +
Sbjct: 322 MGFEPQIRKIVNEVPTKR---QTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANK 378
Query: 293 VKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQ 352
+ L + K + + I + E + IIF T+ L + L + AI
Sbjct: 379 SITQTIEVLAPMEKHSRL-EQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIH 436
Query: 353 GALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEP 412
G + +RD ++ +FR G T VL++TDV ARG D + I +V+NYD P
Sbjct: 437 GDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPN------------ 484
Query: 413 DYEVYLHRVGRAGRFGRKGAVFNLISDE 440
E Y+HR+GR GR G G + D+
Sbjct: 485 GVEDYVHRIGRTGRAGATGLAYTFFGDQ 512
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 177/381 (46%), Gaps = 42/381 (11%)
Query: 72 FEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGM 131
F+D + +++ + ++ F +P+ IQ PM L RDLI A GSGKT ++L
Sbjct: 167 FQDANFPDNILEAI-AKLGFTEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPA 223
Query: 132 LSRVD--PKL---QAPQALCICPTRELAIQNIEVLRKMGKYTGISSEC---AVPMDS--R 181
L V P+L P L + PTRELA+Q E RK G +G+ S C P R
Sbjct: 224 LVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 283
Query: 182 DVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLR 241
D+ +R +VI TPG + + + + R+ LV DEAD+ML + GF+ +
Sbjct: 284 DL----RR---GVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML-DMGFEP---Q 332
Query: 242 IMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY--KVR 299
I K + ++ Q LL+SAT + + + + ++ Q V
Sbjct: 333 IRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVP 392
Query: 300 CLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNED 359
++ +++ + + + + +IFV T+ + + L G+ AI G +
Sbjct: 393 TPEKYNRLLTLLKQLMDG----SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSE 448
Query: 360 RDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLH 419
RD+++ EF+ G + ++ +TDV ARG D + I V+NYD P E Y+H
Sbjct: 449 RDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNT------------LEDYIH 496
Query: 420 RVGRAGRFGRKGAVFNLISDE 440
R+GR GR G KG F + +
Sbjct: 497 RIGRTGRAGAKGMAFTFFTHD 517
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 175/383 (45%), Gaps = 44/383 (11%)
Query: 72 FEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGM 131
F D+ L++ L + P+ IQ LP++LS RD+I A GSGKT FVL M
Sbjct: 99 FMDMKFPSPLLRMLK-DKGIMHPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPM 155
Query: 132 --LSRVDPKL------QAPQALCICPTRELAIQNIEVLRKM-------GKYTGISSECAV 176
L+ + + + P AL ICP+RELA Q +V+ + G S C
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 177 PMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQ 236
+D R + + K+ H+V+ TPG +K ++ KK+ + ++L DEAD+ L + GF+
Sbjct: 216 GVDMRSQLDVVKKG---VHIVVATPGRLKDILAKKKMSLDACRLLTLDEADR-LVDLGFE 271
Query: 237 DDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY 296
DD I + S Q LLFSAT R +LD +++
Sbjct: 272 DD---IRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEV 328
Query: 297 KVRCLDELSKIEVIRDYIFEN-GENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGAL 355
E K E Y+ E + +IF + +H+ L+ G E AI G
Sbjct: 329 ------EYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGK 382
Query: 356 NNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYE 415
+ EDRD + F+ G VL++TDV ++G D I VINYD+P + E
Sbjct: 383 DQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP------------GEIE 430
Query: 416 VYLHRVGRAGRFGRKGAVFNLIS 438
Y+HR+GR GR G+ G I+
Sbjct: 431 NYVHRIGRTGRCGKTGIATTFIN 453
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 193/417 (46%), Gaps = 50/417 (11%)
Query: 74 DLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPP--HRDLIAQAHNGSGKTTCFVLGM 131
DL +SPE+VK L +K IQ +L P RD+I +A G+GKT F + +
Sbjct: 120 DLGISPEIVKALKGR-GIEKLFPIQ----KAVLEPAMEGRDMIGRARTGTGKTLAFGIPI 174
Query: 132 LSRV------DPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS---RD 182
+ ++ + + PQ L + PTRELA Q + R E A +D+
Sbjct: 175 IDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFR----------ESAPSLDTICLYG 224
Query: 183 VIPINKRPPVMAH---VVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDS 239
PI ++ + + V +GTPG I + L ++ ++ +V DEADQML + GF +D
Sbjct: 225 GTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQML-QVGFAEDV 283
Query: 240 LRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSL-DAVKQYKV 298
I+ +KL + Q ++FSAT V + L D + Y +
Sbjct: 284 EIIL---QKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSI 340
Query: 299 RCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNE 358
D + +I + E+G+ G+ I+F +T+ A L L Y+ A+ G ++
Sbjct: 341 -AADSYGRASIIGPLVKEHGKG-GKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQA 397
Query: 359 DRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYL 418
R++ + FRDG +L++TDV ARG D ++LVI+Y+LP + E ++
Sbjct: 398 QRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELP------------NNTETFV 445
Query: 419 HRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEVREKSTEDFKACLKEA 475
HR GR GR G+KG+ LI + + IE G+ E+ + E A + E
Sbjct: 446 HRTGRTGRAGKKGSAI-LIHGQDQTRAVKMIEKEVGSRFNELPSIAVERGSASMFEG 501
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 125/420 (29%), Positives = 184/420 (43%), Gaps = 75/420 (17%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
TF +L + ELVK + ++ PSKIQ +LP L +D+I A GSGKT F +
Sbjct: 10 TFAELGVREELVKACE-RLGWKNPSKIQAEALPFALE--GKDVIGLAQTGSGKTGAFAIP 66
Query: 131 MLS---------------RVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECA 175
+L R DP A A + PTRELAIQ E +G IS CA
Sbjct: 67 ILQALLEYVYDSEPKKGRRPDP---AFFACVLSPTRELAIQIAEQFEALG--ADISLRCA 121
Query: 176 VPMDSRD----VIPINKRPPVMAHVVIGTPGTIKKWIS-FKKLGVARLKILVFDEADQML 230
V + D I + KRP HV++ TPG + +S K + LK LV DEAD++L
Sbjct: 122 VLVGGIDRMQQTIALGKRP----HVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLL 177
Query: 231 AEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXX--------XXXXXHNQLF 282
ED F+ +I++EI + LFSAT ++ +
Sbjct: 178 NED-FEKSLNQILEEIPLER---KTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVD 233
Query: 283 VRKEELSLDAVKQ---YKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHK 339
K++ A K Y V L E+ + ++IF RT + + L
Sbjct: 234 TLKQQYRFVAAKYKDCYLVYILSEMPE---------------STSMIFTRTCDGTRFLAL 278
Query: 340 ALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLP 399
L LG+ I G + R + +F+ G +L+ TDV +RG D +++VINYD+P
Sbjct: 279 VLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIP 338
Query: 400 VKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTE 459
+ + Y+HRVGR R GR G +L+ ++ + +IE G + E
Sbjct: 339 T------------NSKDYIHRVGRTARAGRSGVGISLV-NQYELEWYIQIEKLIGKKLPE 385
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 189/400 (47%), Gaps = 49/400 (12%)
Query: 60 SSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHN 119
+SGD TF ++ L L + K+ KP+ +Q ++P++L RDL+A A
Sbjct: 149 TSGDNVPPPVNTFAEIDLGEALNLNIR-RCKYVKPTPVQRHAIPILLE--GRDLMACAQT 205
Query: 120 GSGKTTCFVLGMLSRV--DPKLQAPQ--------ALCICPTRELAIQNIEVLRKMGKYTG 169
GSGKT F ++S + D +Q P+ A+ + PTRELA Q + +K TG
Sbjct: 206 GSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTG 265
Query: 170 ISSECAVPMDSRDVIPINKRPPVMAH---VVIGTPGTIKKWISFKKLGVARLKILVFDEA 226
+ A PIN++ + +++ TPG + + ++ + ++ L DEA
Sbjct: 266 VKVVVAY-----GGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEA 320
Query: 227 DQMLAEDGFQDDSLRIMKEIEKLNSGC-QVLLFSATXXXXXXXXXXXXXXXXHNQLF--V 283
D+ML + GF+ +I+++++ G Q LLFSAT N +F V
Sbjct: 321 DRML-DMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLA---NYIFLAV 376
Query: 284 RKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQ-----TIIFVRTRNSAKMLH 338
+ S D + Q LD + ++ D + EN Q T++FV T+ A L
Sbjct: 377 GRVGSSTDLIVQRVEFVLDSDKRSHLM-DLLHAQRENGIQGKQALTLVFVETKRGADSLE 435
Query: 339 KALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDL 398
L G+ T+I G ++R+ +K F+ G T +L++TDV ARG D + V+N+DL
Sbjct: 436 NWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDL 495
Query: 399 PVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKG---AVFN 435
P D + Y+HR+GR GR G+ G A FN
Sbjct: 496 PN------------DIDDYVHRIGRTGRAGKSGLATAFFN 523
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 125/440 (28%), Positives = 202/440 (45%), Gaps = 65/440 (14%)
Query: 66 YTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTT 125
Y + TF + +L PE V L F+KPS IQ + P +L RDLI A GSGKT
Sbjct: 112 YAALKTFAESNL-PENV--LDCCKTFEKPSPIQSHTWPFLLD--GRDLIGIAKTGSGKTL 166
Query: 126 CFVLGMLSRVDPKLQA---------PQALCICPTRELAIQNIEVLRKMGKYTGISSECAV 176
F + + V K + P L + PTRELA+Q +VLR+ G+ G+ S C
Sbjct: 167 AFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVY 226
Query: 177 PMDSRDVIPINKRPPVMA-----HVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLA 231
S K P + A +VIGTPG ++ I L ++ + +V DEAD+ML
Sbjct: 227 GGSS-------KGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRML- 278
Query: 232 EDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLD 291
+ GF++ I+ K+ Q+++FSAT ++ + +L+ +
Sbjct: 279 DMGFEEPVRFILSNTNKVR---QMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAAN 335
Query: 292 AVKQYKVRCLDELSK----IEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYE 347
+ LDE ++ I ++ Y + + ++F + A+ L + L G++
Sbjct: 336 HDVMQIIEVLDERARDQRLIALLEKY---HKSQKNRVLVFALYKVEAERLERFLQQRGWK 392
Query: 348 VTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYT 407
+I G +R + + F++G +L++TDV ARG D + +VINY P+
Sbjct: 393 AVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLT------ 446
Query: 408 REPEPDYEVYLHRVGRAGRFGRKGAVFN------------LISDERDAN-IMSKIENHFG 454
E Y+HR+GR GR G+KG L++ R+A ++ FG
Sbjct: 447 ------TEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLLKFG 500
Query: 455 THVTEVREKSTEDFKACLKE 474
TH V++K ++ + A KE
Sbjct: 501 TH---VKKKESKLYGAHFKE 517
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 172/363 (47%), Gaps = 35/363 (9%)
Query: 88 EMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRV--DPKLQA---P 142
++ ++KP IQ +LP+I+S RD I A GSGKT FVL ML + P ++A P
Sbjct: 208 KLNYEKPMPIQTQALPIIMS--GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 265
Query: 143 QALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPG 202
L + PTREL Q +RK K GI C V +V+ TPG
Sbjct: 266 IGLVMAPTRELVQQIHSDIRKFSKPLGI--RCVPVYGGSGVAQQISELKRGTEIVVCTPG 323
Query: 203 TIKKWI---SFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFS 259
+ + S K + R+ LV DEAD+M + GF+ RI++ I Q +LFS
Sbjct: 324 RMIDILCTSSGKITNLRRVTFLVMDEADRMF-DMGFEPQITRIIQNIRPER---QTVLFS 379
Query: 260 ATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDE--LSKIEVIRDYIFEN 317
AT + ++ D + +VR + L +E++ ++
Sbjct: 380 ATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW---- 435
Query: 318 GENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLIS 377
G+ ++FV+++ L++ ++ Y ++ G + DR+ + +F++ + +LI+
Sbjct: 436 -SEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIA 494
Query: 378 TDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLI 437
T V ARG D +++ LV+N+D P H YE Y+HRVGR GR GRKG I
Sbjct: 495 TSVAARGLDVKELELVVNFDAP-NH-----------YEDYVHRVGRTGRAGRKGCAVTFI 542
Query: 438 SDE 440
S++
Sbjct: 543 SED 545
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 189/400 (47%), Gaps = 49/400 (12%)
Query: 60 SSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHN 119
+SGD TF ++ L L + K+ KP+ +Q ++P++ + RDL+A A
Sbjct: 136 TSGDNVPPPVNTFAEIDLGEALNLNIQ-RCKYVKPTPVQRNAIPILAA--GRDLMACAQT 192
Query: 120 GSGKTTCFVLGMLSRV--DPKLQAPQ--------ALCICPTRELAIQNIEVLRKMGKYTG 169
GSGKT F ++S + D ++ P+ A+ + PTRELA Q + RK TG
Sbjct: 193 GSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTG 252
Query: 170 ISSECAVPMDSRDVIPINKRPPVMAH---VVIGTPGTIKKWISFKKLGVARLKILVFDEA 226
+ A P+N++ + +++ TPG + + ++ + ++ L DEA
Sbjct: 253 VKVVVAY-----GGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEA 307
Query: 227 DQMLAEDGFQDDSLRIMKEIEKLNSGC-QVLLFSATXXXXXXXXXXXXXXXXHNQLF--V 283
D+ML + GF+ +I+++++ G Q +LFSAT N +F V
Sbjct: 308 DRML-DMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLS---NYIFLAV 363
Query: 284 RKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQ-----TIIFVRTRNSAKMLH 338
+ S D + Q +V + + K + D + EN Q T++FV T+ A L
Sbjct: 364 GRVGSSTDLIVQ-RVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLE 422
Query: 339 KALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDL 398
L G+ T I G + ++R+ ++ F+ G T +L++TDV ARG D + V+N+DL
Sbjct: 423 NWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDL 482
Query: 399 PVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKG---AVFN 435
P D + Y+HR+GR GR G G A FN
Sbjct: 483 PN------------DIDDYVHRIGRTGRAGNSGLATAFFN 510
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 194/416 (46%), Gaps = 50/416 (12%)
Query: 74 DLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPP--HRDLIAQAHNGSGKTTCFVLGM 131
+L +SPE+VK L + +K IQ +L P RD+I +A G+GKT F + +
Sbjct: 108 ELGISPEIVKALSSK-GIEKLFPIQ----KAVLEPAMEGRDMIGRARTGTGKTLAFGIPI 162
Query: 132 LSRV------DPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS---RD 182
+ ++ + + P L + PTRELA Q + R E A +D+
Sbjct: 163 IDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFR----------ESAPSLDTICLYG 212
Query: 183 VIPINKRPPVMAH---VVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDS 239
PI ++ + + V +GTPG + + L ++ ++ +V DEADQML + GF +D
Sbjct: 213 GTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQML-QVGFAEDV 271
Query: 240 LRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSL-DAVKQYKV 298
I+ EKL Q ++FSAT V + L D + Y +
Sbjct: 272 EIIL---EKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSI 328
Query: 299 RCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNE 358
D + +I + E+ + G+ I+F +T+ A L AL ++ A+ G ++
Sbjct: 329 -IADSYGRASIIGPLVTEHAKG-GKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQS 385
Query: 359 DRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYL 418
R++ + FRDG +L++TDV ARG D ++L+I+Y+LP + E ++
Sbjct: 386 QRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELP------------NNTETFV 433
Query: 419 HRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEVREKSTEDFKACLKE 474
HR GR GR G+KG+ LI + + + IE G+ TE+ + E A + E
Sbjct: 434 HRTGRTGRAGKKGSAI-LIYSQDQSRAVKIIEREVGSRFTELPSIAVERGSASMFE 488
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 178/377 (47%), Gaps = 30/377 (7%)
Query: 87 VEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVD-PKLQAPQAL 145
E+ F++P+ IQ ++P++LS R+ A A GSGKT F+ ML ++ P +A+
Sbjct: 157 AELGFKEPTPIQRQAIPILLS--GRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAV 214
Query: 146 CICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIK 205
+ P RELA Q +K+ K S + + ++ ++ + V+I TP +K
Sbjct: 215 ILSPARELAAQTAREGKKLIK----GSNFHIRLMTKPLVKTADFSKLWCDVLISTPMRLK 270
Query: 206 KWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVL--LFSATXX 263
+ I KK+ +++++ LV DE+D++ F+ L+ + + K S ++ LFSAT
Sbjct: 271 RAIKAKKIDLSKVEYLVLDESDKL-----FEQSLLKQIDCVVKACSNPSIIRSLFSATLP 325
Query: 264 XXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQ 323
+ RK S + VKQ V E K+ +R E+
Sbjct: 326 DSVEELARSIMHDAVRVIIGRKNTAS-ETVKQKLVFAGSEEGKLLALRQSFAESLN--PP 382
Query: 324 TIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLAR 383
+IFV+++ AK L+ L I L +R+ V +FR G VLI+TDV+AR
Sbjct: 383 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 442
Query: 384 GFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDA 443
G D + IN VINYD P +A Y+HR+GR+GR GR G + E+D
Sbjct: 443 GMDFKGINCVINYDFPDSASA------------YIHRIGRSGRAGRSGEAITFYT-EQDV 489
Query: 444 NIMSKIENHFGTHVTEV 460
+ I N + EV
Sbjct: 490 PFLRNIANTMMSSGCEV 506
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 189/399 (47%), Gaps = 48/399 (12%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
S GD P TF D+ L L + K+ +P+ +Q ++P++L+ RDL+A A
Sbjct: 141 TSGGDVP-PPVNTFADIDLGDALNLNIR-RCKYVRPTPVQRHAIPILLA--ERDLMACAQ 196
Query: 119 NGSGKTTCFVLGMLSRV--DPKLQAPQ--------ALCICPTRELAIQNIEVLRKMGKYT 168
GSGKT F ++S + D ++ P+ A+ + PTRELA Q + +K T
Sbjct: 197 TGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQT 256
Query: 169 GISSECAVPMDSRDVIPINKRPPVMAH---VVIGTPGTIKKWISFKKLGVARLKILVFDE 225
G+ A PI+++ + +++ TPG + + ++ + ++ L DE
Sbjct: 257 GVKVVVAY-----GGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDE 311
Query: 226 ADQMLAEDGFQDDSLRIMKEIEKLNSGC-QVLLFSATXXXXXXXXXXXXXXXXHNQLF-- 282
AD+ML + GF+ +I+++++ G Q +LFSAT N +F
Sbjct: 312 ADRML-DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMS---NYIFLA 367
Query: 283 VRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQ---TIIFVRTRNSAKMLHK 339
V + S D + Q +V + E K + D + E + T++FV T+ A L
Sbjct: 368 VGRVGSSTDLITQ-RVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLEN 426
Query: 340 ALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLP 399
L + T+I G ++R+ ++ F+ G T +L++TDV ARG D + V+N+DLP
Sbjct: 427 WLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP 486
Query: 400 VKHTAEYTREPEPDYEVYLHRVGRAGRFGRKG---AVFN 435
D + Y+HR+GR GR G+ G A FN
Sbjct: 487 N------------DIDDYVHRIGRTGRAGKSGIATAFFN 513
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 189/399 (47%), Gaps = 48/399 (12%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
S GD P TF D+ L L + K+ +P+ +Q ++P++L+ RDL+A A
Sbjct: 141 TSGGDVP-PPVNTFADIDLGDALNLNIR-RCKYVRPTPVQRHAIPILLA--ERDLMACAQ 196
Query: 119 NGSGKTTCFVLGMLSRV--DPKLQAPQ--------ALCICPTRELAIQNIEVLRKMGKYT 168
GSGKT F ++S + D ++ P+ A+ + PTRELA Q + +K T
Sbjct: 197 TGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQT 256
Query: 169 GISSECAVPMDSRDVIPINKRPPVMAH---VVIGTPGTIKKWISFKKLGVARLKILVFDE 225
G+ A PI+++ + +++ TPG + + ++ + ++ L DE
Sbjct: 257 GVKVVVAY-----GGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDE 311
Query: 226 ADQMLAEDGFQDDSLRIMKEIEKLNSGC-QVLLFSATXXXXXXXXXXXXXXXXHNQLF-- 282
AD+ML + GF+ +I+++++ G Q +LFSAT N +F
Sbjct: 312 ADRML-DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMS---NYIFLA 367
Query: 283 VRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQ---TIIFVRTRNSAKMLHK 339
V + S D + Q +V + E K + D + E + T++FV T+ A L
Sbjct: 368 VGRVGSSTDLITQ-RVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLEN 426
Query: 340 ALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLP 399
L + T+I G ++R+ ++ F+ G T +L++TDV ARG D + V+N+DLP
Sbjct: 427 WLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP 486
Query: 400 VKHTAEYTREPEPDYEVYLHRVGRAGRFGRKG---AVFN 435
D + Y+HR+GR GR G+ G A FN
Sbjct: 487 N------------DIDDYVHRIGRTGRAGKSGIATAFFN 513
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 189/399 (47%), Gaps = 48/399 (12%)
Query: 59 VSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAH 118
S GD P TF D+ L L + K+ +P+ +Q ++P++L+ RDL+A A
Sbjct: 141 TSGGDVP-PPVNTFADIDLGDALNLNIR-RCKYVRPTPVQRHAIPILLA--ERDLMACAQ 196
Query: 119 NGSGKTTCFVLGMLSRV--DPKLQAPQ--------ALCICPTRELAIQNIEVLRKMGKYT 168
GSGKT F ++S + D ++ P+ A+ + PTRELA Q + +K T
Sbjct: 197 TGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQT 256
Query: 169 GISSECAVPMDSRDVIPINKRPPVMAH---VVIGTPGTIKKWISFKKLGVARLKILVFDE 225
G+ A PI+++ + +++ TPG + + ++ + ++ L DE
Sbjct: 257 GVKVVVAY-----GGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDE 311
Query: 226 ADQMLAEDGFQDDSLRIMKEIEKLNSGC-QVLLFSATXXXXXXXXXXXXXXXXHNQLF-- 282
AD+ML + GF+ +I+++++ G Q +LFSAT N +F
Sbjct: 312 ADRML-DMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMS---NYIFLA 367
Query: 283 VRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQ---TIIFVRTRNSAKMLHK 339
V + S D + Q +V + E K + D + E + T++FV T+ A L
Sbjct: 368 VGRVGSSTDLITQ-RVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLEN 426
Query: 340 ALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLP 399
L + T+I G ++R+ ++ F+ G T +L++TDV ARG D + V+N+DLP
Sbjct: 427 WLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP 486
Query: 400 VKHTAEYTREPEPDYEVYLHRVGRAGRFGRKG---AVFN 435
D + Y+HR+GR GR G+ G A FN
Sbjct: 487 N------------DIDDYVHRIGRTGRAGKSGIATAFFN 513
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 172/378 (45%), Gaps = 31/378 (8%)
Query: 69 AATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
AA F + P + +Y F PS IQ S P+ + +RD++A A GSGKT ++
Sbjct: 228 AAGFNSYLVLPANGRMVY-SAGFSAPSPIQAQSWPIAMQ--NRDIVAIAKTGSGKTLGYL 284
Query: 129 LG---MLSRV--DPKLQAPQALCICPTRELAIQ-NIEVLRKMGKYTGISSECAVPMDSRD 182
+ L R+ D ++ P L + PTRELA Q +E L K GK + IS CA
Sbjct: 285 IPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEAL-KFGKSSKIS--CACLYGGAP 340
Query: 183 VIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRI 242
P K +V+ TPG + + K++ + ++ LV DEAD+ML + GF+ +I
Sbjct: 341 KGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRML-DMGFEPQIRKI 399
Query: 243 MKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLD 302
+ E+ Q L+++AT +EL + + L
Sbjct: 400 VNEVPTKR---QTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLA 456
Query: 303 ELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDK 362
+ K + + I + E + IIF T+ L + L + AI G + +RD
Sbjct: 457 PMEKHSRL-EQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDD 514
Query: 363 IVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVG 422
++ +FR G T VL++TDV ARG D + I +V+NYD P E Y+HR+G
Sbjct: 515 VLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPN------------GVEDYVHRIG 562
Query: 423 RAGRFGRKGAVFNLISDE 440
R GR G G + D+
Sbjct: 563 RTGRAGATGLAYTFFGDQ 580
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 187/378 (49%), Gaps = 38/378 (10%)
Query: 72 FEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGM 131
FE L+L P + + + ++ P+ IQ ++P+ILS D++A A GSGKT F++ M
Sbjct: 30 FESLNLGPNVFNAIK-KKGYKVPTPIQRKTMPLILS--GVDVVAMARTGSGKTAAFLIPM 86
Query: 132 LSRVDPKLQAPQ----ALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRD--VIP 185
L ++ K PQ AL + PTR+LA Q ++ +++GK+T + V DS +
Sbjct: 87 LEKL--KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEE 144
Query: 186 INKRPPVMAHVVIGTPGTIKKWIS-FKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMK 244
+ K P V+I TPG + +S + + ++ +VFDEAD + GF + +I+
Sbjct: 145 LTKGP----DVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGM-GFAEQLHQILT 199
Query: 245 EIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY-KVRCLDE 303
+ L+ Q LLFSAT + ++S D + VR ++
Sbjct: 200 Q---LSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEK 256
Query: 304 LSKI-EVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDK 362
S + ++R++I + QT+IFV T++ + ++ E + G ++ + R
Sbjct: 257 YSALLYLVREHISSDQ----QTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKI 312
Query: 363 IVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVG 422
V FR T +LI TD+ ARG D ++ VIN+D P P P ++++HRVG
Sbjct: 313 HVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFP----------PRP--KIFVHRVG 360
Query: 423 RAGRFGRKGAVFNLISDE 440
RA R GR G ++ ++ E
Sbjct: 361 RAARAGRTGCAYSFVTPE 378
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 171/362 (47%), Gaps = 35/362 (9%)
Query: 89 MKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRV--DPKLQA---PQ 143
+ ++KP IQ +LP+I+S RD I A GSGKT FVL ML + P ++A P
Sbjct: 547 LNYEKPMPIQTQALPIIMS--GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPI 604
Query: 144 ALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGT 203
L + PTREL Q +RK K GI C V +V+ TPG
Sbjct: 605 GLVMAPTRELVQQIHSDIRKFSKPLGIR--CVPVYGGSGVAQQISELKRGTEIVVCTPGR 662
Query: 204 IKKWI---SFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSA 260
+ + S K + R+ LV DEAD+M + GF+ RI I+ + Q +LFSA
Sbjct: 663 MIDILCTSSGKITNLRRVTFLVMDEADRMF-DMGFEPQITRI---IQNIRPERQTVLFSA 718
Query: 261 TXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDE--LSKIEVIRDYIFENG 318
T + ++ D + +VR + L +E++ ++
Sbjct: 719 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW----- 773
Query: 319 ENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLIST 378
G+ ++FV+++ L++ ++ Y ++ G + DR+ + +F++ + +LI+T
Sbjct: 774 SEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIAT 833
Query: 379 DVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLIS 438
V ARG D +++ LV+N+D P H YE Y+HRVGR GR GRKG IS
Sbjct: 834 SVAARGLDVKELELVVNFDAP-NH-----------YEDYVHRVGRTGRAGRKGCAVTFIS 881
Query: 439 DE 440
++
Sbjct: 882 ED 883
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 178/403 (44%), Gaps = 46/403 (11%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
+F D+ P+ V + F +P+ IQ PM + RDLI A GSGKT ++L
Sbjct: 100 SFRDVGF-PDYVLEEVKKAGFTEPTPIQSQGWPMAMK--GRDLIGIAETGSGKTLSYLLP 156
Query: 131 MLSRVD--PKL---QAPQALCICPTRELAIQNIEVLRKMGKYTGISSEC---AVPMDSRD 182
+ V+ P L P L + PTRELA+Q + K G + I + C VP
Sbjct: 157 AIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVP----- 211
Query: 183 VIPINKRPPVM-----AHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQD 237
K P V +VI TPG + + + R+ LV DEAD+ML + GF
Sbjct: 212 -----KGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRML-DMGFDP 265
Query: 238 DSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYK 297
+I K + + Q L +SAT + + + + A++Q
Sbjct: 266 ---QIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQI- 321
Query: 298 VRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNN 357
V + E K + + E+ + + ++F+ T+ + + L G+ +I G +
Sbjct: 322 VDVISESQKYNKLVK-LLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQ 380
Query: 358 EDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVY 417
+RD ++ EFR G + ++ +TDV ARG D + + VINYD P E Y
Sbjct: 381 AERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGS------------LEDY 428
Query: 418 LHRVGRAGRFGRKGAVFNL--ISDERDANIMSKIENHFGTHVT 458
+HR+GR GR G KG + +++ R A ++ I G V+
Sbjct: 429 VHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVS 471
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 169/364 (46%), Gaps = 49/364 (13%)
Query: 111 RDLIAQAHNGSGKTTCFVLGMLSRVDPKL----------QAPQALCICPTRELAIQ---- 156
RD+IA+A G+GKT F + ++ R+ + + P+ L + PTRELA Q
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 157 ---NIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKL 213
+ L + Y G+S +R V VV+GTPG I I + L
Sbjct: 200 IKESAPYLSTVCVYGGVSYTIQQSALTRGV-----------DVVVGTPGRIIDLIEGRSL 248
Query: 214 GVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXX 273
+ ++ LV DEADQMLA GF++ I+ E L + Q +LFSAT
Sbjct: 249 KLGEVEYLVLDEADQMLAV-GFEEAVESIL---ENLPTKRQSMLFSATMPTWVKKLARKY 304
Query: 274 XXXXHN-QLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRN 332
N L ++E + +K Y + SK ++ D I + G+TI+F +T+
Sbjct: 305 LDNPLNIDLVGDQDEKLAEGIKLYAI-ATTSTSKRTILSDLITVYAKG-GKTIVFTQTKR 362
Query: 333 SAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINL 392
A + AL + A+ G ++ R++ + FR G VL++TDV +RG D ++L
Sbjct: 363 DADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL 421
Query: 393 VINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENH 452
VI+Y+LP D E ++HR GR GR G++G+ + + + + S +E
Sbjct: 422 VIHYELP------------NDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS-LERD 468
Query: 453 FGTH 456
G H
Sbjct: 469 VGCH 472
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 169/364 (46%), Gaps = 49/364 (13%)
Query: 111 RDLIAQAHNGSGKTTCFVLGMLSRVDPKL----------QAPQALCICPTRELAIQ---- 156
RD+IA+A G+GKT F + ++ R+ + + P+ L + PTRELA Q
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 157 ---NIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKL 213
+ L + Y G+S +R V VV+GTPG I I + L
Sbjct: 200 IKESAPYLSTVCVYGGVSYTIQQSALTRGV-----------DVVVGTPGRIIDLIEGRSL 248
Query: 214 GVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXX 273
+ ++ LV DEADQMLA GF++ I+ E L + Q +LFSAT
Sbjct: 249 KLGEVEYLVLDEADQMLAV-GFEEAVESIL---ENLPTKRQSMLFSATMPTWVKKLARKY 304
Query: 274 XXXXHN-QLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRN 332
N L ++E + +K Y + SK ++ D I + G+TI+F +T+
Sbjct: 305 LDNPLNIDLVGDQDEKLAEGIKLYAI-ATTSTSKRTILSDLITVYAKG-GKTIVFTQTKR 362
Query: 333 SAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINL 392
A + AL + A+ G ++ R++ + FR G VL++TDV +RG D ++L
Sbjct: 363 DADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL 421
Query: 393 VINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENH 452
VI+Y+LP D E ++HR GR GR G++G+ + + + + S +E
Sbjct: 422 VIHYELP------------NDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS-LERD 468
Query: 453 FGTH 456
G H
Sbjct: 469 VGCH 472
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 182/393 (46%), Gaps = 38/393 (9%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
TFED S +++ + + ++KP+ IQ +LP++LS RD+I A GSGKT FVL
Sbjct: 229 TFEDCGFSSQIMSAIK-KQAYEKPTAIQCQALPIVLS--GRDVIGIAKTGSGKTAAFVLP 285
Query: 131 MLSRV--DPKLQ---APQALCICPTRELAIQNIEVLRKMGKYTGIS-SECAVPMDSRDVI 184
M+ + P+LQ P + PTRELA Q +K K G+ S M +
Sbjct: 286 MIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQF 345
Query: 185 PINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMK 244
K +V+ TPG + + K L + R LV DEAD+M + GF+ I+
Sbjct: 346 ---KELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMF-DLGFEPQVRSIVG 401
Query: 245 EIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDEL 304
+I Q LLFSAT ++ V + ++ + + Q +
Sbjct: 402 QIRPDR---QTLLFSATMPWKVEKLAREILSDPI-RVTVGEVGMANEDITQVVNVIPSDA 457
Query: 305 SKIEVIRDYIFENGENM---GQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRD 361
K+ ++ E M G ++F + + + L ++V A+ G + R
Sbjct: 458 EKLP----WLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRM 513
Query: 362 KIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRV 421
+ +++F+ G+ VLI+TDV ARG D + + V+NYD+ D ++++HR+
Sbjct: 514 ETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDI------------AKDMDMHVHRI 561
Query: 422 GRAGRFG-RKGAVFNLISDERDANIMSKIENHF 453
GR GR G R G + L++ +R+A ++ N
Sbjct: 562 GRTGRAGDRDGVAYTLVT-QREARFAGELVNSL 593
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 169/364 (46%), Gaps = 49/364 (13%)
Query: 111 RDLIAQAHNGSGKTTCFVLGMLSRVDPKL----------QAPQALCICPTRELAIQ---- 156
RD+IA+A G+GKT F + ++ R+ + + P+ L + PTRELA Q
Sbjct: 47 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 106
Query: 157 ---NIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKL 213
+ L + Y G+S +R V VV+GTPG I I + L
Sbjct: 107 IKESAPYLSTVCVYGGVSYTIQQSALTRGV-----------DVVVGTPGRIIDLIEGRSL 155
Query: 214 GVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXX 273
+ ++ LV DEADQMLA GF++ I+ E L + Q +LFSAT
Sbjct: 156 KLGEVEYLVLDEADQMLAV-GFEEAVESIL---ENLPTKRQSMLFSATMPTWVKKLARKY 211
Query: 274 XXXXHN-QLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRN 332
N L ++E + +K Y + SK ++ D I + G+TI+F +T+
Sbjct: 212 LDNPLNIDLVGDQDEKLAEGIKLYAI-ATTSTSKRTILSDLITVYAKG-GKTIVFTQTKR 269
Query: 333 SAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINL 392
A + AL + A+ G ++ R++ + FR G VL++TDV +RG D ++L
Sbjct: 270 DADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDL 328
Query: 393 VINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENH 452
VI+Y+LP D E ++HR GR GR G++G+ + + + + S +E
Sbjct: 329 VIHYELP------------NDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS-LERD 375
Query: 453 FGTH 456
G H
Sbjct: 376 VGCH 379
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 174/380 (45%), Gaps = 58/380 (15%)
Query: 97 IQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGML-------SRVDPKL---QAPQALC 146
IQ + M+L DL+ +A G GKT FVL +L ++ K+ ++P L
Sbjct: 122 IQASTFDMVLD--GADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLV 179
Query: 147 ICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKK 206
+ PTRELA Q G G+SS C DS V + V +V+GTPG IK
Sbjct: 180 LLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV--DIVVGTPGRIKD 237
Query: 207 WISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXX 266
I + L + L+ V DEAD+ML GF +D I+ ++E ++ Q LLFSAT
Sbjct: 238 HIERQNLDFSYLQFRVLDEADEML-RMGFVEDVELILGKVED-STKVQTLLFSATLPSWV 295
Query: 267 XXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIEV----------IRDYI-- 314
+ F+++++ ++D V K++ + + I + I D I
Sbjct: 296 KNI---------SNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISC 346
Query: 315 FENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQV 374
+ +G GQTIIF T+ L L+D A+ G + R+ + FR+G
Sbjct: 347 YSSG---GQTIIFAETKVQVSELS-GLLD---GSRALHGEIPQSQREVTLAGFRNGKFAT 399
Query: 375 LISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVF 434
L++T+V ARG D + L+I EP + E Y+HR GR GR G G
Sbjct: 400 LVATNVAARGLDINDVQLIIQC------------EPPREVEAYIHRSGRTGRAGNTGVAV 447
Query: 435 NLISDERDANIMSKIENHFG 454
L D R +++ S+IE G
Sbjct: 448 TLY-DSRKSSV-SRIEKEAG 465
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 177/394 (44%), Gaps = 52/394 (13%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
++E+ L+ EL+K + ++KPS IQ ++P+ L RD+I A GSGKT FVL
Sbjct: 314 SWEESKLTSELLKAVE-RAGYKKPSPIQMAAIPLGLQ--QRDVIGIAETGSGKTAAFVLP 370
Query: 131 ML---SRVDP-----KLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDS-- 180
ML SR+ P + + P A+ + PTRELA Q E K Y G V S
Sbjct: 371 MLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIE 430
Query: 181 RDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSL 240
+ I + +VI TPG + + + + + +V DEAD+M+ + GF+
Sbjct: 431 EQGLKITQ----GCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI-DMGFEPQVA 485
Query: 241 RIMKEIEKLNSGCQ--------------VLLFSATXXXXXXXXXXXXXXXXHNQLFVR-- 284
++ + N + +FSAT N + V
Sbjct: 486 GVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYL---RNPVVVTIG 542
Query: 285 KEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDL 344
+ D + Q+ V + E K ++ + E GE I+FV T+ + + K L
Sbjct: 543 TAGKTTDLISQH-VIMMKESEKFFRLQKLLDELGEKTA--IVFVNTKKNCDSIAKNLDKA 599
Query: 345 GYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTA 404
GY VT + G + E R+ ++ FR VL++TDV+ RG D + VINYD+P KH
Sbjct: 600 GYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMP-KHI- 657
Query: 405 EYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLIS 438
E+Y HR+GR GR G+ G + ++
Sbjct: 658 ----------EMYTHRIGRTGRAGKSGVATSFLT 681
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 176/392 (44%), Gaps = 57/392 (14%)
Query: 66 YTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTT 125
Y S F+ LSP +KG+ + F+ + +Q +LP+IL +D++A+A G+GKT
Sbjct: 76 YLSKTRFDQFPLSPLTLKGIE-DAGFKTMTVVQEATLPLILQ--GKDILAKAKTGTGKTV 132
Query: 126 CFVLGMLSRVDPKLQAPQA-----------LCICPTRELAIQ---NIEVLRKMGKYTGIS 171
F+L + V ++AP A L +CPTRELA Q +L K G+
Sbjct: 133 AFLLPSIEAV---IKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQ 189
Query: 172 ---SECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARL---KILVFDE 225
+P + R + K P +++ TPG +K I RL K+LV DE
Sbjct: 190 VVIGGTKLPTEQRR---LQKSP---CQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDE 243
Query: 226 ADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRK 285
AD +L + GF+ + RI+ + K Q LFSAT H + +
Sbjct: 244 ADHLL-DMGFRREIERIIAAVPKQR---QTFLFSATVSDEVRQICHVALKRDHEFVNCVQ 299
Query: 286 E---ELSLDAVKQYKVRCLDELSKI--EVIRDYIFENGENMG-QTIIFVRTRNSAKMLHK 339
E E + Y + LD + +++ +I +N +G + IIF T +++
Sbjct: 300 EGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDN---VGYKVIIFCTTAMVTRLVAD 356
Query: 340 ALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLP 399
L L V I R ++ EFR + +L+++DV ARG D ++LV+ LP
Sbjct: 357 LLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLP 416
Query: 400 VKHTAEYTREPEPDYEVYLHRVGRAGRFGRKG 431
D E Y+HR+GR GR G++G
Sbjct: 417 ------------SDREQYIHRLGRTGRKGKEG 436
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 182/408 (44%), Gaps = 57/408 (13%)
Query: 69 AATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFV 128
A TF +L+LS L++ + ++KP+ IQ +P+ L+ RDL A A GSGKT F
Sbjct: 166 ADTFMELNLSRPLLRACET-LGYKKPTPIQAACIPLALT--GRDLCASAITGSGKTAAFA 222
Query: 129 LGMLSRV--DPK-LQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIP 185
L L R+ PK + A + L + PTRELA+Q +++ + ++T I +C + + V
Sbjct: 223 LPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDI--KCGLIVGGLSVRE 280
Query: 186 INKRPPVMAHVVIGTPG-TIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMK 244
M +V+ TPG I + + + L +L+ DEAD++L + GF
Sbjct: 281 QEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-QTGF-------AT 332
Query: 245 EIEKLNSGC----QVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKE-ELSLDAVKQYKVR 299
EI +L C Q +LFSAT +L + K LS D +
Sbjct: 333 EITELVRLCPKRRQTMLFSATMTEEVKELV---------KLSLNKPLRLSADPSARRPPG 383
Query: 300 CLDELSKIEVIRDYIFENGENM----------GQTIIFVRTRNSAKMLHKALVDLGYEVT 349
+E+ +I R+ N E + + IIF T+ +A L G +
Sbjct: 384 LTEEVVRIRRTREA---NQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAA 440
Query: 350 AIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTRE 409
+ G L R ++ FR LI+TDV ARG D + VINY P
Sbjct: 441 ELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPR--------- 491
Query: 410 PEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHV 457
+ + Y+HRVGR R GR+G ++D D +++ I G+ +
Sbjct: 492 ---EIDSYVHRVGRTARAGREGYAVTFVTDS-DRSLLKVIAKKVGSKL 535
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 174/391 (44%), Gaps = 55/391 (14%)
Query: 66 YTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTT 125
Y S F+ LSP +K + + F+ + +Q +LP+IL +D++A+A G+GKT
Sbjct: 378 YLSKTRFDQFPLSPLSLKAIK-DAGFETMTVVQEATLPIILQ--GKDVLAKAKTGTGKTV 434
Query: 126 CFVLGMLSRVDPKLQAPQA-----------LCICPTRELAIQNIEVLRKMGKY---TGIS 171
F+L + V +++P A L +CPTRELA Q + KY G+
Sbjct: 435 AFLLPAIEAV---IKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQ 491
Query: 172 ---SECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARL---KILVFDE 225
+P + R + P +++ TPG +K I RL K+LV DE
Sbjct: 492 VVIGGTKLPTEQRR---MQTNP---CQILVATPGRLKDHIENTSGFATRLMGVKVLVLDE 545
Query: 226 ADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRK 285
AD +L + GF+ D RI+ + K Q LFSAT H + +
Sbjct: 546 ADHLL-DMGFRRDIERIIAAVPKQR---QTFLFSATVPEEVRQICHVALKRDHEFINCVQ 601
Query: 286 E---ELSLDAVKQYKVRCLDE-LSKIEVI-RDYIFENGENMGQTIIFVRTRNSAKMLHKA 340
E E + Y + LD S + V+ +++I +N + + IIF T +++
Sbjct: 602 EGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDY--KVIIFCTTAMVTRLVADL 659
Query: 341 LVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPV 400
L L V I R ++ EFR +L+++DV ARG D ++LV+ LP
Sbjct: 660 LSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPS 719
Query: 401 KHTAEYTREPEPDYEVYLHRVGRAGRFGRKG 431
D E Y+HR+GR GR G++G
Sbjct: 720 ------------DREQYIHRLGRTGRKGKEG 738
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 192/469 (40%), Gaps = 123/469 (26%)
Query: 64 TPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGK 123
+P SA +FE+L L L+ L E F P+ +Q ++P I+ D + Q++ GSGK
Sbjct: 104 SPLFSAKSFEELGLPDSLLDSLERE-GFSVPTDVQSAAVPAIIKG--HDAVIQSYTGSGK 160
Query: 124 TTCFVLGMLSRVDP-------------KLQAPQALCICPTRELAIQNIEVLRKMGKYTG- 169
T ++L +LS + P K QA+ + P+REL +Q ++R++ K G
Sbjct: 161 TLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQ---IVREVEKLLGP 217
Query: 170 -----ISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFD 224
+ R + K P +V+GTPG I + KL + LV D
Sbjct: 218 VHRRMVQQLVGGANRMRQEEALKKNKPA---IVVGTPGRIAEISKGGKLHTHGCRFLVLD 274
Query: 225 EADQMLAEDGFQDDSLRIMKEIEKLNSGC------------QVLLFSATXXXXXXXXXXX 272
E D++L+ + F++D RI++ + K SG Q +L SAT
Sbjct: 275 EVDELLSFN-FREDIHRILEHVGK-RSGAGPKGEVDERANRQTILVSAT---VPFSVIRA 329
Query: 273 XXXXXHNQLFVRKEELS-LDAVK------------------------------------- 294
H + V+ +++ LD V+
Sbjct: 330 AKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCIS 389
Query: 295 --QYKV----RCLDELSKIEVIRDYIFENGENMGQTIIF---VRTRNSAKMLHKALVDLG 345
Q+KV RC+ L VI F N + +++ R NSA+M
Sbjct: 390 KHQHKVDTLRRCVHALDAQSVI---AFMNHSRQLKDVVYKLEARGMNSAEM--------- 437
Query: 346 YEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAE 405
G L R ++K+F++G +VL++ ++ ARG D + +LV+N +LP
Sbjct: 438 ------HGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPT----- 486
Query: 406 YTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFG 454
D Y HR GR GR GRKG V + +E I+ K+E G
Sbjct: 487 -------DAVHYAHRAGRTGRLGRKGTVVT-VCEESQVFIVKKMEKQLG 527
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 159/362 (43%), Gaps = 62/362 (17%)
Query: 88 EMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRV--DPKLQA---P 142
++ ++KP IQ +LP+I+S RD I A GSGKT FVL ML + P ++A P
Sbjct: 413 KLNYEKPMPIQAQALPIIMS--GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Query: 143 QALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPG 202
L + PTREL Q +RK K GI C V +V+ TPG
Sbjct: 471 IGLVMAPTRELVQQIYSDIRKFSKALGII--CVPVYGGSGVAQQISELKRGTEIVVCTPG 528
Query: 203 TIKKWI---SFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFS 259
+ + S K + R+ LV DEAD+M + GF+ RI ++ + Q +LFS
Sbjct: 529 RMIDILCTSSGKITNLRRVTYLVMDEADRMF-DMGFEPQITRI---VQNIRPDRQTVLFS 584
Query: 260 ATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDE-LSKIEVIRDYIFENG 318
AT + ++ D + ++R E S++ + +E
Sbjct: 585 ATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWYEK- 643
Query: 319 ENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLIST 378
G+ ++FVR+ ++K + +F+ + +LI+T
Sbjct: 644 ---GKVLVFVRS-----------------------------QEKSISDFKSDVCNLLIAT 671
Query: 379 DVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLIS 438
V ARG D +++ LV+N+D P H YE Y+HRVGR GR GRKG IS
Sbjct: 672 SVAARGLDVKELELVVNFDAP-NH-----------YEDYVHRVGRTGRAGRKGCAVTFIS 719
Query: 439 DE 440
++
Sbjct: 720 ED 721
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 166/382 (43%), Gaps = 37/382 (9%)
Query: 66 YTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTT 125
Y + F+ LSP +K + + ++ + +Q +LP+IL +D++A+A G+GKT
Sbjct: 316 YLTKTRFDHYPLSPLSLKAIK-DAGYETMTVVQEATLPIILK--GKDVLAKAKTGTGKTV 372
Query: 126 CFVLGMLSRV--------DPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVP 177
F+L + V D K AL ICPTRELA Q + KY V
Sbjct: 373 AFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVI 432
Query: 178 MDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLK---ILVFDEADQMLAEDG 234
+R + + +++ TPG +K I RLK +LV DEAD +L + G
Sbjct: 433 GGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLL-DMG 491
Query: 235 FQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKE---ELSLD 291
F+ D RI+ + K Q LFSAT H + E E
Sbjct: 492 FRKDIERIISAVPKER---QTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQ 548
Query: 292 AVKQYKVRCLDELSKI--EVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVT 349
+ + + LD + ++R++I N + + I+F T K++ L +L V
Sbjct: 549 VRQMHMIASLDRHFSLLYTLLREHIMGNVDY--KVIVFCTTAMVTKLVADLLGELNLNVR 606
Query: 350 AIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTRE 409
I R ++ EFR +L+++DV ARG D + LV+ LP
Sbjct: 607 EIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLP---------- 656
Query: 410 PEPDYEVYLHRVGRAGRFGRKG 431
D E Y+HR+GR GR G++G
Sbjct: 657 --KDREQYIHRLGRTGRKGKEG 676
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 152/326 (46%), Gaps = 30/326 (9%)
Query: 72 FEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGM 131
F+D + +++ + ++ F +P+ IQ PM L RDLI A GSGKT ++L
Sbjct: 167 FQDANFPDNILEAI-AKLGFTEPTPIQAQGWPMALK--GRDLIGIAETGSGKTLAYLLPA 223
Query: 132 LSRVD--PKL---QAPQALCICPTRELAIQNIEVLRKMGKYTGISSEC---AVPMDS--R 181
L V P+L P L + PTRELA+Q E RK G +G+ S C P R
Sbjct: 224 LVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 283
Query: 182 DVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLR 241
D+ +R +VI TPG + + + + R+ LV DEAD+ML + GF+ +
Sbjct: 284 DL----RR---GVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML-DMGFEP---Q 332
Query: 242 IMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQY--KVR 299
I K + ++ Q LL+SAT + + + + ++ Q V
Sbjct: 333 IRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVP 392
Query: 300 CLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNED 359
++ +++ + + + + +IFV T+ + + L G+ AI G +
Sbjct: 393 TPEKYNRLLTLLKQLMDG----SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSE 448
Query: 360 RDKIVKEFRDGLTQVLISTDVLARGF 385
RD+++ EF+ G + ++ +TDV ARG
Sbjct: 449 RDRVLAEFKSGRSPIMTATDVAARGL 474
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 172/385 (44%), Gaps = 34/385 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
TF L P+L+ L + P+ IQ ++P L+ + L+A A GSGKT F++
Sbjct: 111 TFTSCGLPPKLLLNLETA-GYDFPTPIQMQAIPAALT--GKSLLASADTGSGKTASFLVP 167
Query: 131 MLSRV--------DPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRD 182
++SR + + P A+ + PTREL +Q + + +GK G+ + A+ +
Sbjct: 168 IISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGK--GLPFKTALVVGGDP 225
Query: 183 VIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRI 242
+ R ++IGTPG + +S + + + V DE D ML + GF+D ++I
Sbjct: 226 MSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCML-QRGFRDQVMQI 284
Query: 243 MKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLD 302
+ + S QVLLFSAT + + AV Q + +D
Sbjct: 285 FQAL----SQPQVLLFSATISREVEKVGGSLAKEII-LVSIGNPNKPNKAVNQLAI-WVD 338
Query: 303 ELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKAL-VDLGYEVTAIQGALNNEDRD 361
K + + D + +++V +R A +L A+ V G + +I G ++R
Sbjct: 339 AKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERR 398
Query: 362 KIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRV 421
++ F G VL+ST VL RG D + VI +D+P +E Y+H +
Sbjct: 399 DVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMP-----STIKE-------YIHVI 446
Query: 422 GRAGRFGRKGAVFNLISDERDANIM 446
GRA R G KG + +E D N+
Sbjct: 447 GRASRMGEKGTAIVFV-NEDDRNLF 470
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 172/385 (44%), Gaps = 34/385 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
TF L P+L+ L + P+ IQ ++P L+ + L+A A GSGKT F++
Sbjct: 111 TFTSCGLPPKLLLNLETA-GYDFPTPIQMQAIPAALT--GKSLLASADTGSGKTASFLVP 167
Query: 131 MLSRV--------DPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRD 182
++SR + + P A+ + PTREL +Q + + +GK G+ + A+ +
Sbjct: 168 IISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGK--GLPFKTALVVGGDP 225
Query: 183 VIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRI 242
+ R ++IGTPG + +S + + + V DE D ML + GF+D ++I
Sbjct: 226 MSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCML-QRGFRDQVMQI 284
Query: 243 MKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLD 302
+ + S QVLLFSAT + + AV Q + +D
Sbjct: 285 FQAL----SQPQVLLFSATISREVEKVGGSLAKEII-LVSIGNPNKPNKAVNQLAI-WVD 338
Query: 303 ELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKAL-VDLGYEVTAIQGALNNEDRD 361
K + + D + +++V +R A +L A+ V G + +I G ++R
Sbjct: 339 AKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERR 398
Query: 362 KIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRV 421
++ F G VL+ST VL RG D + VI +D+P +E Y+H +
Sbjct: 399 DVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMP-----STIKE-------YIHVI 446
Query: 422 GRAGRFGRKGAVFNLISDERDANIM 446
GRA R G KG + +E D N+
Sbjct: 447 GRASRMGEKGTAIVFV-NEDDRNLF 470
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 169/394 (42%), Gaps = 59/394 (14%)
Query: 73 EDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGML 132
ED ++S Y K P + ++P+ L RD+I + GSGKT FVL ML
Sbjct: 211 EDFNIS-------YRGSKIPHPMRNWEETIPLGLE--QRDVIGISATGSGKTAAFVLPML 261
Query: 133 ---SRVDP-----KLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVI 184
SR+ P + + P AL + PTRELA Q E K +Y G + +S
Sbjct: 262 AYISRLPPMREENQTEGPYALVMVPTRELAHQIEEETVKFSRYLGFKAVSITGWES---- 317
Query: 185 PINKRPPVMAH---VVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLR 241
I K+ ++ +VI TPG + + + + + + LV DEAD+M+ D F+
Sbjct: 318 -IEKQALKLSQGCEIVIATPGRLLDCLERRYVVLNQCNYLVLDEADRMIDMD-FEPQVSE 375
Query: 242 IMKEIEKLNSGCQ--------------VLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEE 287
++ + N + +FSAT N + V E
Sbjct: 376 VLDVMPCSNLKPEKEDEELEEKKIYRTTYMFSATMLLSVERLARKFL---RNPVVVTIGE 432
Query: 288 LSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGY- 346
+ +Q V E K ++ I + G++ I+FV TRN + K L +G
Sbjct: 433 TTKFITQQ--VIMTKESDKFSRLKKLIDDLGDD-KTAIVFVNTRNKVDYIVKNLEKVGRC 489
Query: 347 EVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEY 406
VT + + E RD ++EF+ VL++TDVL RG D + VINYD+P
Sbjct: 490 RVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMP------- 542
Query: 407 TREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDE 440
++Y HR+GR GR G+ G ++ E
Sbjct: 543 -----NTMDLYTHRIGRTGRAGKTGVATTFLTLE 571
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 175/385 (45%), Gaps = 54/385 (14%)
Query: 66 YTSAATFEDLSLSPELVKGL----YVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGS 121
Y F L +S + +GL YV+M + +Q ++P L RD++ A GS
Sbjct: 67 YAGVRKFAQLPISDKTKRGLKDAKYVDM-----TDVQSAAIPHALC--GRDILGAARTGS 119
Query: 122 GKTTCFVLGMLSRVDPKLQAPQ----ALCICPTRELAIQNIEVLRKMGKYTGISSECAVP 177
GKT FV+ +L ++ + +P+ + I PTRELA Q VL K+GK+ S+ +
Sbjct: 120 GKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSA--GLL 177
Query: 178 MDSRDVIPINKRPPVMAHVVIGTPGTIKKWI-SFKKLGVARLKILVFDEADQMLAEDGFQ 236
+ R+ + + K ++++ PG + + + +L+IL+ DEAD++L + F+
Sbjct: 178 IGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVL-DSAFK 236
Query: 237 DDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEE---LSLDAV 293
I+ ++ K Q LLFSAT +L +R E + +AV
Sbjct: 237 GQLDPIISQLPKHR---QTLLFSATQTKKVKDLA---------RLSLRDPEYISVHAEAV 284
Query: 294 KQYKVRCLDELSKIEVIRD----YIFENGENMGQTIIFVRTRNSAKMLHKALVDL--GYE 347
+ + + V + + F + ++F+ T+ K +H+A L G
Sbjct: 285 TATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIP 344
Query: 348 VTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFD-QQQINLVINYDLPVKHTAEY 406
+ ++ G ++ E R + +F + + VL TDVLARG D + ++ V+ D P
Sbjct: 345 LKSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCP------- 396
Query: 407 TREPEPDYEVYLHRVGRAGRFGRKG 431
D Y+HRVGR RF +G
Sbjct: 397 -----EDVASYIHRVGRTARFYTQG 416
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 105/185 (56%), Gaps = 16/185 (8%)
Query: 280 QLFVRKE-ELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLH 338
+++V E +L+L + Q+ ++ L E+ K + D + + + Q +IFV++ + A L+
Sbjct: 290 EIYVDDEAKLTLHGLVQHYIK-LSEMEKNRKLNDLL--DALDFNQVVIFVKSVSRAAELN 346
Query: 339 KALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDL 398
K LV+ + I ++ E+R K F++G ++L++TD++ RG D +++N+VINYD+
Sbjct: 347 KLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDM 406
Query: 399 PVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVT 458
P + YLHRVGRAGRFG KG ++ D+ ++++++ F +
Sbjct: 407 P------------DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIK 454
Query: 459 EVREK 463
E+ E+
Sbjct: 455 ELPEQ 459
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 17/212 (8%)
Query: 55 NIQAVSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLI 114
N +AV G S+ F D L PEL++ + V+ F+ PS++Q +P + D+I
Sbjct: 32 NGEAVKKGYVGIHSSG-FRDFLLKPELLRAI-VDSGFEHPSEVQHECIPQAILG--MDVI 87
Query: 115 AQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKY---TGIS 171
QA +G GKT FVL L +++P AL +C TRELA Q + Y T +S
Sbjct: 88 CQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVS 147
Query: 172 S-ECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQML 230
V + + N+ P H+V+GTPG + K L + ++ + DE D+ML
Sbjct: 148 VFYGGVNIKIHKDLLKNECP----HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Query: 231 AEDGFQDDSLRIMKEIEKLN-SGCQVLLFSAT 261
D R ++EI K+ QV++FSAT
Sbjct: 204 E----SLDMRRDVQEIFKMTPHDKQVMMFSAT 231
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 105/185 (56%), Gaps = 16/185 (8%)
Query: 280 QLFVRKE-ELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLH 338
+++V E +L+L + Q+ ++ L E+ K + D + + + Q +IFV++ + A L+
Sbjct: 308 EIYVDDEAKLTLHGLVQHYIK-LSEMEKNRKLNDLL--DALDFNQVVIFVKSVSRAAELN 364
Query: 339 KALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDL 398
K LV+ + I ++ E+R K F++G ++L++TD++ RG D +++N+VINYD+
Sbjct: 365 KLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDM 424
Query: 399 PVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVT 458
P + YLHRVGRAGRFG KG ++ D+ ++++++ F +
Sbjct: 425 P------------DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIK 472
Query: 459 EVREK 463
E+ E+
Sbjct: 473 ELPEQ 477
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 17/212 (8%)
Query: 55 NIQAVSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLI 114
N +AV G S+ F D L PEL++ + V+ F+ PS++Q +P + D+I
Sbjct: 32 NGEAVKKGYVGIHSSG-FRDFLLKPELLRAI-VDSGFEHPSEVQHECIPQAILG--MDVI 87
Query: 115 AQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKY---TGIS 171
QA +G GKT FVL L +++P AL +C TRELA Q + Y T +S
Sbjct: 88 CQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVS 147
Query: 172 S-ECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQML 230
V + + N+ P H+V+GTPG + K L + ++ + DE D+ML
Sbjct: 148 VFYGGVNIKIHKDLLKNECP----HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Query: 231 AEDGFQDDSLRIMKEIEKLN-SGCQVLLFSAT 261
D R ++EI K+ QV++FSAT
Sbjct: 204 E----SLDMRRDVQEIFKMTPHDKQVMMFSAT 231
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 175/379 (46%), Gaps = 34/379 (8%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
TF+ L LS + + EM FQ ++IQ S+ +L +D++ A GSGKT F++
Sbjct: 90 TFDSLDLSEQTSIAIK-EMGFQYMTQIQAGSIQPLLE--GKDVLGAARTGSGKTLAFLIP 146
Query: 131 MLS-----RVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIP 185
+ R P+ + ICPTRELAIQ V ++ K+ + + ++R
Sbjct: 147 AVELLFKERFSPR-NGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEA 205
Query: 186 INKRPPVMAHVVIGTPGTIKKWISFKKLGVAR-LKILVFDEADQMLAEDGFQDDSLRIMK 244
+R +++VI TPG + + K + + LK LV DEAD++L E+ F++D +I+K
Sbjct: 206 --QRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRIL-EENFEEDMNKILK 262
Query: 245 EIEKLNSGCQVLLFSATXXXXXXXXXXXXXXX-XHNQLFVRKEELSLDAVKQYKVRCLDE 303
+ K Q LFSAT H + + +++ + ++Q C+
Sbjct: 263 ILPKTR---QTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQG--YCVVP 317
Query: 304 LSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKI 363
SK +I F + ++F T S + + + +V+ I G ++ R K
Sbjct: 318 -SKQRLILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKT 376
Query: 364 VKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGR 423
+F +L+ TDV ARG D ++ +I YD P K T Y+HRVGR
Sbjct: 377 FFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTE------------YIHRVGR 424
Query: 424 AGRF-GRKG-AVFNLISDE 440
R G KG A+ LI +E
Sbjct: 425 TARGEGAKGKALLVLIPEE 443
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 179/402 (44%), Gaps = 51/402 (12%)
Query: 72 FEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGM 131
F++L LS E V G E+ + P++IQ I +P ++ + ++ +H GSGKT ++L +
Sbjct: 114 FQELGLSEE-VMGALQELNIEVPTEIQCIGIPAVME--RKSVVLGSHTGSGKTLAYLLPI 170
Query: 132 --LSRVD-------PKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRD 182
L R D K + P+ + +CPTREL+ Q V + + + S V SR
Sbjct: 171 VQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRS-ILVSGGSR- 228
Query: 183 VIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRI 242
+ P +V+GTPG I + I + + LV DEAD M + GF + +
Sbjct: 229 IRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMF-DRGFGPEIRKF 287
Query: 243 M-----KEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYK 297
+ + ++ + G Q +L +AT ++ F E L + +
Sbjct: 288 LAPLNQRALKTNDQGFQTVLVTATMTMAVQKLV--------DEEFQGIEHLRTSTLHKKI 339
Query: 298 VRCLDEL-------SKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTA 350
+ K+E + + + + ++F T NS++ + L +
Sbjct: 340 ANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVN 399
Query: 351 IQGALNNEDRDKIVKEFRD--GLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR 408
G + E R + +K+F+D G L+ TD+ ARG D ++ V+ +D P K++ +
Sbjct: 400 YHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLD-LDVDHVVMFDFP-KNSID--- 454
Query: 409 EPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIE 450
YLHR GR R G KG V +L+S +D + ++IE
Sbjct: 455 --------YLHRTGRTARMGAKGKVTSLVS-RKDQMLAARIE 487
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 153/344 (44%), Gaps = 31/344 (9%)
Query: 111 RDLIAQAHNGSGKTTCFVLGMLSRVDP--------KLQAPQALCICPTRELAIQNIEVLR 162
+ L+A A GSGKT F++ ++SR + + P A+ + PTREL +Q + +
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 163 KMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILV 222
+GK G+ + A+ + + R ++IGTPG + +S + + + V
Sbjct: 71 MLGK--GLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFV 128
Query: 223 FDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLF 282
DE D ML + GF+D ++I + + S QVLLFSAT +
Sbjct: 129 LDEVDCML-QRGFRDQVMQIFQAL----SQPQVLLFSATISREVEKVGGSLAKEII-LVS 182
Query: 283 VRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKAL- 341
+ AV Q + +D K + + D + +++V +R A +L A+
Sbjct: 183 IGNPNKPNKAVNQLAI-WVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAIT 241
Query: 342 VDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVK 401
V G + +I G ++R ++ F G VL+ST VL RG D + VI +D+P
Sbjct: 242 VVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMP-- 299
Query: 402 HTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANI 445
+ Y+H +GRA R G KG + +E D N+
Sbjct: 300 ----------STIKEYIHVIGRASRMGEKGTAIVFV-NEDDRNL 332
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 176/414 (42%), Gaps = 89/414 (21%)
Query: 71 TFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLG 130
+FE+L L L++ L + +KP+ IQ ++P IL +D++A+A GSGKT ++L
Sbjct: 47 SFEELGLDSRLIRAL-TKKGIEKPTLIQQSAIPYILE--GKDVVARAKTGSGKTLAYLLP 103
Query: 131 MLSR------VDPKLQAPQALCICPTRELAIQN-------IEVLRKMGKYTGISSECAVP 177
+L + V K AP A + P+REL Q IE+ R K ++S +
Sbjct: 104 LLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSAS 163
Query: 178 MDSRDVIPINKRPPVMAHVVIGTPGTIKKWIS---FKKLGVAR-LKILVFDEADQMLAED 233
D R+ + + +++ TP I K + + V+ L ILV DEAD +L+
Sbjct: 164 -DMRNAL------AGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSY- 215
Query: 234 GFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVR------KEE 287
G++D+ LR + I + CQ LL SAT HN + + KEE
Sbjct: 216 GYEDN-LRSVTSI--IPRRCQCLLMSAT---TSSDVEKLKKLILHNPIVLTLTEDNDKEE 269
Query: 288 LSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYE 347
V+Q+ + C + + ++ E + + +IF+ T + L L G +
Sbjct: 270 AVPSNVQQFWISCSAQDKLLHILALLKLEVVQK--KILIFINTIDMGFRLKLFLEKFGIK 327
Query: 348 VTAIQGALNNEDRDKIVKEFRDGLTQVLISTD---------------------------- 379
+ G L R I+++F GL LI+TD
Sbjct: 328 SAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSK 387
Query: 380 -------VLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGR 426
+ RG D ++++ VIN+D+P T Y+HR+GR GR
Sbjct: 388 PKLDAEFGVVRGIDFKKVHTVINFDMPQSVTG------------YIHRIGRTGR 429
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 174/386 (45%), Gaps = 38/386 (9%)
Query: 64 TPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGK 123
T + TFE LSLS K + EM F + ++IQ ++P ++ D++ A GSGK
Sbjct: 148 TSIMTNKTFESLSLSDNTYKSIK-EMGFARMTQIQAKAIPPLMM--GEDVLGAARTGSGK 204
Query: 124 TTCFVLG---MLSRVD--PKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPM 178
T F++ +L RV P+ L ICPTRELAIQ+ V +++ KY + +
Sbjct: 205 TLAFLIPAVELLYRVKFTPR-NGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGG 263
Query: 179 DSRDVIPINKRPPVMA---HVVIGTPGTIKKWISFKKLGVAR-LKILVFDEADQMLAEDG 234
+ R ++A ++++ TPG + + + + LK LV DEAD++L E
Sbjct: 264 EKRKT-----EAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRIL-EQN 317
Query: 235 FQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXX-XHNQLFVRKEELSLDAV 293
F++D +I+ + K Q LFSAT + + ++E++ + +
Sbjct: 318 FEEDLKKILNLLPKTR---QTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGL 374
Query: 294 KQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQG 353
+Q + + ++ + + + ++F T S K + + ++ I+G
Sbjct: 375 EQGYCVVPSAMRLLFLLT--FLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRG 432
Query: 354 ALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPD 413
++ R +F T +L+ T+V ARG D ++ ++ YD P T
Sbjct: 433 GIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTD--------- 483
Query: 414 YEVYLHRVGRAGRF-GRKGAVFNLIS 438
Y+HRVGR R G KG +++
Sbjct: 484 ---YIHRVGRTARGEGAKGKALLVLT 506
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 170/393 (43%), Gaps = 48/393 (12%)
Query: 68 SAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCF 127
SA F++ +SP +K L K +++Q +L L +D + +A G+GK+ F
Sbjct: 326 SAKRFDESCISPLTLKALSAS-GILKMTRVQDATLSECLD--GKDALVKAKTGTGKSMAF 382
Query: 128 VLGMLSRVDPKLQAPQ---------ALCICPTRELAIQ---NIEVLRKMGKYTGISSECA 175
+L + V + + + AL +CPTRELA Q + L K G+ +
Sbjct: 383 LLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIG 442
Query: 176 VPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARL---KILVFDEADQMLAE 232
D + P ++I TPG + I K +RL K+ + DEAD +L +
Sbjct: 443 GTRFKLDQQRLESEP---CQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEAD-LLLD 498
Query: 233 DGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDA 292
GF+ D + K I+ L Q LLFSAT H+ + + + L
Sbjct: 499 LGFRRD---VEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYI----DTIGLGC 551
Query: 293 VKQY-KVR--CL--DELSKIEVIRDYIFENGENMG--QTIIFVRTRNSAKMLHKALVDLG 345
V+ + KVR C+ S ++ + E+ N + I+F T +++ L ++
Sbjct: 552 VETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMK 611
Query: 346 YEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAE 405
V I R ++ EF++ +L+++DV ARG + + LVI +P
Sbjct: 612 LNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIP------ 665
Query: 406 YTREPEPDYEVYLHRVGRAGRFGRKGAVFNLIS 438
D E Y+HR+GR GR G+ G LI+
Sbjct: 666 ------SDREQYIHRLGRTGREGKGGEGLLLIA 692
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 171/396 (43%), Gaps = 54/396 (13%)
Query: 68 SAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCF 127
SA F++ +SP +K L K +++Q +L L +D + +A G+GK+ F
Sbjct: 373 SAKRFDESCISPLTLKALSAS-GIVKMTRVQDATLSECLD--GKDALVKAKTGTGKSMAF 429
Query: 128 VLGMLSRVDPKLQAPQA---------LCICPTRELAIQ-NIEVLRKMGKYTGISSECAVP 177
+L + V + + + L +CPTRELA Q E + + GI + +
Sbjct: 430 LLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIG 489
Query: 178 MDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARL---KILVFDEADQMLAEDG 234
+R + + ++I TPG + I K +RL K+ + DEAD +L + G
Sbjct: 490 -GTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEAD-LLLDLG 547
Query: 235 FQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEELSLDAVK 294
F+ D + K I+ L Q LLFSAT +QL ++++ +D +
Sbjct: 548 FKRD---VEKIIDCLPRQRQSLLFSATIPKEVRRV---------SQLVLKRDHSYIDTIG 595
Query: 295 QYKVRCLDEL----------SKIEVIRDYIFENGENMG--QTIIFVRTRNSAKMLHKALV 342
V D++ S ++ + E+ NM + I+F T +++ L
Sbjct: 596 LGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLR 655
Query: 343 DLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKH 402
++ V I R + EF++ +L+++DV ARG + + LVI +P
Sbjct: 656 EMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIP--- 712
Query: 403 TAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLIS 438
D E Y+HR+GR GR G+ G LI+
Sbjct: 713 ---------SDREQYIHRLGRTGREGKGGKGLLLIA 739
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 162/371 (43%), Gaps = 46/371 (12%)
Query: 91 FQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRV------DPKLQAPQA 144
F+ + +Q ++P + S H+D++ A GSGKT F+L + + PK
Sbjct: 36 FEVCTPVQAETIPFLCS--HKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMG 93
Query: 145 LCICPTRELAIQNIEVLRK-MGKYTGISSECAVPMDSRDV-IPINKRPPVMAHVVIGTPG 202
+ I PTREL+ Q +V + ++S V R+V +N A+++IGTPG
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLV--GGREVEADMNTLEEEGANLLIGTPG 151
Query: 203 TIKKWIS-FKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSAT 261
+ + + L L+IL+ DEAD++L + GFQ I I +L + LFSAT
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLL-DMGFQKQVNYI---ISRLPKQRRTGLFSAT 207
Query: 262 XXXXXXXXXXXXXXXXHNQLFV-----RKEELSLDAVKQYKVRCLDELSKIEVIRDYIFE 316
N + V K + S +Y ++C + +++ + E
Sbjct: 208 ---QTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEY-LKCEADQKSSQLVH-LLIE 262
Query: 317 NGENMGQTIIFVRTRNSAK----MLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLT 372
N + ++F T +L K + G ++ + RD + F + +
Sbjct: 263 NKNK--KLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASS 320
Query: 373 QVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKG- 431
VL+ TDV ARG D I+ V+ YD P D +V++HRVGR R R+G
Sbjct: 321 GVLLCTDVAARGLDIPGIDYVVQYD------------PPQDPDVFIHRVGRTARMERQGR 368
Query: 432 AVFNLISDERD 442
A+ L+ E D
Sbjct: 369 AIVFLMPKETD 379
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 166/400 (41%), Gaps = 47/400 (11%)
Query: 72 FEDLS--LSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVL 129
F DL LS ++++ L + F+ + +Q ++P++ S ++D+ A GSGKT FV+
Sbjct: 16 FSDLEPPLSGDIIEALN-QSDFEFCTPVQAATIPLLCS--YKDVAVDAATGSGKTLAFVV 72
Query: 130 GML------SRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDV 183
++ + PK + I PTREL+ Q V + T + + + R+V
Sbjct: 73 PLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVS-TLANVNSVLLVGGREV 131
Query: 184 IPINK-RPPVMAHVVIGTPGTIKKWIS-FKKLGVARLKILVFDEADQMLAEDGFQDDSLR 241
K +V+IGTPG + + + L L+IL+ DEAD++L E GFQ
Sbjct: 132 KADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL-EMGFQRQVNY 190
Query: 242 IMKEIEKLNSGCQVLLFSATXXX-XXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRC 300
I I +L + LFSAT ++ + + S + K
Sbjct: 191 I---ISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPS 247
Query: 301 LDELSKIEV--------IRDYIFENGENMGQTIIFVRTRNSAK----MLHKALVDLGYEV 348
L +E + D + +N + + I+F T S +L K +
Sbjct: 248 GLHLEYMECEADKKSSQLVDLLIKNSDK--KLIVFFMTCASVDYWGLVLSKIPALKSISL 305
Query: 349 TAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTR 408
I G + RDK + F + L+ TDV ARG D I+ V+ YD
Sbjct: 306 IPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYD----------- 354
Query: 409 EPEPDYEVYLHRVGRAGRFGRKGA--VFNLISDERDANIM 446
P D ++ HR GR R GR+G VF L +E M
Sbjct: 355 -PPQDPNMFNHRAGRTARLGRQGRAIVFLLPKEEAYVEFM 393
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 18/133 (13%)
Query: 323 QTIIFVRTRNSAKMLHKALVDLG---YEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTD 379
+ IIF + + + L K L G + G LN R K +K FR G QVL+++D
Sbjct: 337 KCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASD 396
Query: 380 VLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISD 439
L RG D + + VINYD+P P + ++HR GR R G+ G F L+S+
Sbjct: 397 ALTRGMDVKGVTNVINYDMP------------PFAKTFIHRAGRTARAGQAGRCFTLLSN 444
Query: 440 E---RDANIMSKI 449
R + ++ K+
Sbjct: 445 HEVRRFSKLLEKV 457
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/407 (22%), Positives = 167/407 (41%), Gaps = 62/407 (15%)
Query: 63 DTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSG 122
+T + S TF ++ S +++K L E F +P+ IQ ++ ++ + I +GSG
Sbjct: 367 ETGFFSRKTFAEIGCSEDMMKALK-EQNFDRPAHIQAMAFSPVID--GKSCIIADQSGSG 423
Query: 123 KTTCFVLGMLSRV-DPKLQA--------PQALCICPTRELAIQNIEVLRKMGKYTGISSE 173
KT +++ ++ R+ + +LQ P+ + + PT ELA Q + R + S+
Sbjct: 424 KTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSI-------SK 476
Query: 174 CAVPMDSRDVIPINKRPPVMAH------VVIGTPGTIKKWISFKKLGVARLKILVFDEAD 227
VP S V ++ + + V+I TPG ++ LG++ L+ + DE D
Sbjct: 477 SGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVD 536
Query: 228 QMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXXXXXXXXXXXXXXXXHNQLFVRKEE 287
+ +D F+ + I Q L +AT + R
Sbjct: 537 ILFGDDEFE---AALQNLINSSPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHR 593
Query: 288 LSLDAVKQYKVRCLDELSKIEVIRDYIFENGEN----------MGQTIIFVRTRNSAKML 337
+S +A++++ V C + E + F+N + + +TIIF + + +
Sbjct: 594 VS-NALEEFLVDCSGD-DNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKV 651
Query: 338 HKALVDLGYE-----VTAIQGALNNEDRDKIVKEFRDGLTQ----VLISTDVLARGFDQQ 388
+ + V AL+ E R ++EF + L+ TD +RG D
Sbjct: 652 ENIFKRVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFS 711
Query: 389 QINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGR-KGAVF 434
++ V+ +D P R+P Y+ RVGR R R KG F
Sbjct: 712 GVDHVVLFDFP--------RDPSE----YVRRVGRTARGARGKGKAF 746
>AT1G71280.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26870262-26872152 REVERSE LENGTH=465
Length = 465
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 132/315 (41%), Gaps = 63/315 (20%)
Query: 91 FQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRV------DPKLQAPQA 144
F+ + +Q ++P + S H+D++ A GSGKT F+L + + PK
Sbjct: 37 FEVCTPVQAETIPFLCS--HKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMG 94
Query: 145 LCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTI 204
+ I PTREL+ Q +V R + E M++ + A+++IGTPG +
Sbjct: 95 VIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLE--------EEGANLLIGTPGRL 146
Query: 205 KKWIS-FKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATXX 263
+ + L L+IL+ DEAD++L + GFQ I I +L + LFSAT
Sbjct: 147 SDMMKRMEFLDFRNLEILILDEADRLL-DMGFQKQVNYI---ISRLPKQRRTGLFSATQT 202
Query: 264 XXXXXXXXXXXXXXHNQLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQ 323
+L+ ++ ++C + +++ + EN +N
Sbjct: 203 QAVA-------------------DLAKAGLRNPYLKCEADQKSSQLVH-LLIEN-KNKKL 241
Query: 324 TIIFVRTRNSAKMLHKALVD-LGYEVTAI-----------QGALNNEDRDKIVKEFRDGL 371
+ F+ A VD G ++ I G ++ + RD + F +
Sbjct: 242 VVFFMTC---------ACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEAS 292
Query: 372 TQVLISTDVLARGFD 386
+ VL+ TDV ARG D
Sbjct: 293 SGVLLCTDVAARGLD 307
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 322 GQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVL 381
G+TI+F + + + L LG +V + + R K + FR +LI+TD++
Sbjct: 503 GRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLV 562
Query: 382 ARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLI 437
ARG D + + +I+Y LP H+A EVY+HR GR R G LI
Sbjct: 563 ARGIDIKNVRTIIHYKLP--HSA----------EVYVHRCGRTARAFADGCSIALI 606
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 45/200 (22%)
Query: 70 ATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVL 129
+ + + L P L+K +Y + F++P+KIQ + + +D+I A GSGKT F L
Sbjct: 190 SAWSSMRLHPLLMKSIY-RLDFKEPTKIQKACFN-VAAYQGKDVIGAAETGSGKTLAFGL 247
Query: 130 GMLSR-VDPKLQAPQ-------------------ALCICPTRELAIQNIEVLRKMGKYTG 169
+L R +D + + + AL I PTRELA+Q E L K
Sbjct: 248 PILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLS 307
Query: 170 ISSECAVPMDSRDVIPI---------NKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKI 220
+ V+PI +R +V+ TPG + + +S + + L
Sbjct: 308 VK-----------VVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHS 356
Query: 221 LVF---DEADQMLAEDGFQD 237
L F DEAD+M+ F++
Sbjct: 357 LSFFVLDEADRMVERGHFRE 376
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 16/108 (14%)
Query: 347 EVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEY 406
E+ ++G +N R + E R G +L+STD+ ARG D + + N+DLP T
Sbjct: 367 EILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTD-- 424
Query: 407 TREPEPDYEVYLHRVGRAGR--FG-RKGAVFNLISDERDANIMSKIEN 451
YLHR GRAGR F RK V NLI+ E + ++ + EN
Sbjct: 425 ----------YLHRAGRAGRKPFSDRKCIVANLITSE-ERFVLQRYEN 461
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 79 PELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPK 138
PE + E+ F P+ IQ +LP + + RD I A GSGKT ++L + S ++P+
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTG--RDCILHAQTGSGKTLTYLLLIFSLINPQ 141
Query: 139 LQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMD-------SRDVIPINKRPP 191
+ QA+ + PTREL +Q +V R + + I + M R + PP
Sbjct: 142 RSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPP 201
Query: 192 VMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEAD 227
+++ T ++ + + +++LV DE D
Sbjct: 202 A---ILVATVASLCHMLEKHIFRIDSVRVLVVDEVD 234
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 19/188 (10%)
Query: 68 SAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCF 127
++ +F L L +L L M F+ P+ +Q ++P+ILS RD++ A G+GKT +
Sbjct: 27 ASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILS--GRDVLVNAPTGTGKTIAY 84
Query: 128 VLGMLSRV---DPKLQAPQ---ALCICPTRELAIQNIEVLRK-MGKYTGISSECAVPMDS 180
+ ++ + PK+ AL I PTREL +Q E L K + ++ I + +
Sbjct: 85 LAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEK 144
Query: 181 RDVIPINKRPPVMAHVVIGTPGT----IKKWISFKKLGVARLKILVFDEADQMLAEDGFQ 236
+ R + ++I TPG +K SF L+ ++FDEAD +L E G+
Sbjct: 145 KAKEKARLRKGI--SILIATPGRLLDHLKNTASFVH---KNLRWVIFDEADSIL-ELGYG 198
Query: 237 DDSLRIMK 244
+ +I+K
Sbjct: 199 KEIEQIIK 206
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 34/186 (18%)
Query: 293 VKQY-KVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTA- 350
V++Y +V C L + + +FE E + ++F TR++ + L + + +
Sbjct: 303 VQRYLRVPCGARLVALLSVLKNLFER-EASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSE 361
Query: 351 -----------------IQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLV 393
+ G++ EDR F+ VL+STDV ARG D ++ +
Sbjct: 362 TEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCI 421
Query: 394 INYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHF 453
I YD P + T Y+HRVGR R G KG L + + + +++ H
Sbjct: 422 IQYDCPGEATE------------YVHRVGRTARIGEKGEAL-LFLQPIEIDYLKELKKH- 467
Query: 454 GTHVTE 459
G +TE
Sbjct: 468 GASLTE 473
>AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6462100-6463687
FORWARD LENGTH=315
Length = 315
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 16/108 (14%)
Query: 347 EVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEY 406
E+ ++G +N R + E R G +L+STD+ ARG D + + N+DLP T
Sbjct: 210 EILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTD-- 267
Query: 407 TREPEPDYEVYLHRVGRAGR--FG-RKGAVFNLISDERDANIMSKIEN 451
YLHR GRAGR F RK V NLI+ E + ++ + EN
Sbjct: 268 ----------YLHRAGRAGRKPFSDRKCIVANLITSE-ERFVLQRYEN 304