Miyakogusa Predicted Gene

Lj0g3v0159779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0159779.1 Non Chatacterized Hit- tr|H0YQI0|H0YQI0_TAEGU
Uncharacterized protein (Fragment) OS=Taeniopygia
gutt,39.39,4e-16,seg,NULL; DUF1992,DnaJ homologue, subfamily C, member
28, conserved domain,CUFF.9908.1
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03560.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   276   1e-74
AT5G03560.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   7e-08

>AT5G03560.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:900673-902719 REVERSE
           LENGTH=241
          Length = 241

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 148/172 (86%)

Query: 50  KGKKKLVDRLSAVIDAVHDRNLPPELRGQRNNVRSETDLINVVEQRIWHSMEEGQFENLP 109
           + +KK  +R SAVIDAVHDR LPPELRG+R+ VRSETD+INVVEQRIWHSMEEG FENLP
Sbjct: 70  RKEKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSETDIINVVEQRIWHSMEEGHFENLP 129

Query: 110 GKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSRISEWRMSLKKAWTSKC 169
           GKGKPL L TNPHADPAEDTLYRIL+KNG APEWVELNKEIR++  EWR+SLKKAWT K 
Sbjct: 130 GKGKPLNLHTNPHADPAEDTLYRILNKNGFAPEWVELNKEIRNKAKEWRVSLKKAWTMKL 189

Query: 170 SGDHSKWVESSEALKSQLREINNKVFRYNLIVPFGRQMFGLKWEKELGYLEE 221
             D S W E S+ LK++L++INN VFRYNLIVPFGRQMFGLKWEKE+  L+E
Sbjct: 190 EEDQSGWEERSDLLKNELKQINNMVFRYNLIVPFGRQMFGLKWEKEIDRLKE 241


>AT5G03560.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:901452-902719 REVERSE
           LENGTH=363
          Length = 363

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 52  KKKLVDRLSAVIDAVHDRNLPPELRGQRNNVRSE 85
           +KK  +R SAVIDAVHDR LPPELRG+R+ VRS+
Sbjct: 72  EKKTTERFSAVIDAVHDRKLPPELRGRRDFVRSK 105