Miyakogusa Predicted Gene

Lj0g3v0159729.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0159729.1 tr|B9HRR7|B9HRR7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_804223 PE=4
SV=1,82.86,0.00000001,DUF677,Protein of unknown function
DUF677,CUFF.9903.1
         (35 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34320.1 | Symbols:  | Protein of unknown function (DUF677) |...    52   7e-08

>AT4G34320.1 | Symbols:  | Protein of unknown function (DUF677) |
           chr4:16422436-16423824 FORWARD LENGTH=374
          Length = 374

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 2   KNVEDLGVQAGTCSRDIRRAKTVVLQKILKLPQN 35
           KNVE+LG QA  CSRDIRRA+TV+LQ+I+K P N
Sbjct: 336 KNVEELGTQADLCSRDIRRARTVILQRIIKHPNN 369