Miyakogusa Predicted Gene

Lj0g3v0158889.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158889.1 Non Chatacterized Hit- tr|I1I585|I1I585_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,81.25,2e-19,SUBFAMILY NOT NAMED,NULL; COPPER TRANSPORT PROTEIN
ATOX1-RELATED,NULL; HMA, heavy metal-associated d,CUFF.9822.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23760.1 | Symbols:  | Copper transport protein family | chr5...    87   3e-18
AT1G01490.2 | Symbols:  | Heavy metal transport/detoxification s...    51   2e-07
AT1G01490.1 | Symbols:  | Heavy metal transport/detoxification s...    51   2e-07

>AT5G23760.1 | Symbols:  | Copper transport protein family |
          chr5:8013242-8014129 REVERSE LENGTH=103
          Length = 103

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 51/70 (72%)

Query: 21 QKIVLKVLTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGQMDTXXXXXXXXXXX 80
          QK+VLKVLTMTDDKTKQKAIEAAADI+GVDSI AD+K+QKLTVIG MD            
Sbjct: 3  QKVVLKVLTMTDDKTKQKAIEAAADIFGVDSIAADMKDQKLTVIGLMDAVAVVKKLKKVG 62

Query: 81 XXXXXSVGPA 90
               SVGPA
Sbjct: 63 KVDLISVGPA 72


>AT1G01490.2 | Symbols:  | Heavy metal transport/detoxification
          superfamily protein  | chr1:180401-182066 REVERSE
          LENGTH=177
          Length = 177

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 20 LQKIVLKVLTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGQMD 68
          ++KIVLK L + DD+ KQKA++  + + G+DSI  D+KE+KLTVIG +D
Sbjct: 1  MKKIVLK-LDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVD 48


>AT1G01490.1 | Symbols:  | Heavy metal transport/detoxification
          superfamily protein  | chr1:180401-182066 REVERSE
          LENGTH=177
          Length = 177

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 20 LQKIVLKVLTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGQMD 68
          ++KIVLK L + DD+ KQKA++  + + G+DSI  D+KE+KLTVIG +D
Sbjct: 1  MKKIVLK-LDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVD 48