Miyakogusa Predicted Gene

Lj0g3v0158389.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158389.1 Non Chatacterized Hit- tr|B9RJV9|B9RJV9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,43.56,3e-17,seg,NULL,21380_g.1
         (197 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24560.1 | Symbols: UBP16 | ubiquitin-specific protease 16 | ...    47   1e-05

>AT4G24560.1 | Symbols: UBP16 | ubiquitin-specific protease 16 |
           chr4:12679493-12684528 REVERSE LENGTH=1008
          Length = 1008

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 3   SSISPDG--SPALESFYSKFHQLKGILQEXXXXXXXXXXXXXXXXXXCSTESRRDSTSID 60
           SS +P G  S  ++SFYS F +L+ IL+E                  CST    DSTS+D
Sbjct: 892 SSNTPGGGRSGNIQSFYSSFQRLQKILEEDSASDSSSLFDSNSDECSCST----DSTSMD 947

Query: 61  DFSDYIFGD 69
           DF+D+IFGD
Sbjct: 948 DFADFIFGD 956