Miyakogusa Predicted Gene
- Lj0g3v0158389.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0158389.1 Non Chatacterized Hit- tr|B9RJV9|B9RJV9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,43.56,3e-17,seg,NULL,21380_g.1
(197 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24560.1 | Symbols: UBP16 | ubiquitin-specific protease 16 | ... 47 1e-05
>AT4G24560.1 | Symbols: UBP16 | ubiquitin-specific protease 16 |
chr4:12679493-12684528 REVERSE LENGTH=1008
Length = 1008
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 3 SSISPDG--SPALESFYSKFHQLKGILQEXXXXXXXXXXXXXXXXXXCSTESRRDSTSID 60
SS +P G S ++SFYS F +L+ IL+E CST DSTS+D
Sbjct: 892 SSNTPGGGRSGNIQSFYSSFQRLQKILEEDSASDSSSLFDSNSDECSCST----DSTSMD 947
Query: 61 DFSDYIFGD 69
DF+D+IFGD
Sbjct: 948 DFADFIFGD 956