Miyakogusa Predicted Gene

Lj0g3v0158259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158259.1 CUFF.9786.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15680.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   144   4e-35
AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   133   6e-32
AT2G26695.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   100   6e-22

>AT3G15680.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr3:5315437-5316048 FORWARD LENGTH=164
          Length = 164

 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 89/167 (53%), Gaps = 16/167 (9%)

Query: 1   MSRPGDWNCRTCSHLNFQRRESCQRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSRPGDWNCR+CSHLNFQRR+SCQRCG+                                
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTG--- 57

Query: 61  XXXXXXXPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXXXXXXXXXXXXXXXXXX 120
                   DVRPGDWYC VGNCG HNFASRS CFKCG  K+                   
Sbjct: 58  -------SDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDA 110

Query: 121 XXXXXARPG------WKSGDWICSRSGCNEHNFANRMECYRCSAPRD 161
                  PG      WKSGDWIC+R GCNEHNFA+RMEC+RC+APRD
Sbjct: 111 DIMRSRVPGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157


>AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr5:8876639-8877339 FORWARD LENGTH=170
          Length = 170

 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 89/174 (51%), Gaps = 24/174 (13%)

Query: 1   MSRPGDWNCRTCSHLNFQRRESCQRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+RPGDWNCR CSHLNFQRR+SCQRC EP                               
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTG---- 56

Query: 61  XXXXXXXPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXXXXXXXXXXXXXXXXXX 120
                  PDVRPGDWYCN+G+CG HNFA+RS CFKCGA K+                   
Sbjct: 57  -------PDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVG 109

Query: 121 XXXXXARPG-------------WKSGDWICSRSGCNEHNFANRMECYRCSAPRD 161
                   G             WKSGDWIC RSGCNEHNFA+R EC+RC+AP++
Sbjct: 110 PRRGLFGFGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163


>AT2G26695.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr2:11365275-11365789 FORWARD LENGTH=138
          Length = 138

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 70/160 (43%), Gaps = 28/160 (17%)

Query: 5   GDWNCRTCSHLNFQRRESCQRCGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 64
           GDW C  C H NF++RESCQ+CG P                                   
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNR--------------------- 44

Query: 65  XXXPDVRPGDWYCNVGNCGAHNFASRSGCFKCGAPKEXXXXXXXXXXXXXXXXXXXXXXX 124
               +V  GDWYC   NCG+HN+ASR+ C++CG  K                        
Sbjct: 45  ---TEVMAGDWYCGALNCGSHNYASRTSCYRCGMIK----VEYTEQYYGAQMVAYGNDGA 97

Query: 125 XARPGWKSGDWICSRSGCNEHNFANRMECYRCSAPRDSNG 164
              PGWK+GDW+C R GC  HN+A+R EC++C   RD  G
Sbjct: 98  ACPPGWKTGDWVCPRVGCGVHNYASRAECFKCKTTRDYGG 137