Miyakogusa Predicted Gene
- Lj0g3v0157999.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0157999.1 Non Chatacterized Hit- tr|K4AMF8|K4AMF8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si040099,40.23,7e-18,coiled-coil,NULL; HLH,Helix-loop-helix domain;
no description,Helix-loop-helix domain; helix loop he,CUFF.9769.1
(257 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56970.1 | Symbols: BHLH038, ORG2 | basic helix-loop-helix (b... 138 4e-33
AT5G04150.1 | Symbols: BHLH101 | basic helix-loop-helix (bHLH) D... 120 8e-28
AT3G56980.1 | Symbols: BHLH039, ORG3 | basic helix-loop-helix (b... 120 1e-27
AT2G41240.1 | Symbols: BHLH100 | basic helix-loop-helix protein ... 112 2e-25
AT2G41240.2 | Symbols: BHLH100 | basic helix-loop-helix protein ... 107 6e-24
AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA-... 49 4e-06
AT5G53210.1 | Symbols: SPCH | basic helix-loop-helix (bHLH) DNA-... 48 6e-06
AT1G71200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 48 7e-06
>AT3G56970.1 | Symbols: BHLH038, ORG2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:21084204-21085094 REVERSE LENGTH=253
Length = 253
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 123/193 (63%), Gaps = 13/193 (6%)
Query: 67 TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKG 126
KKLNHNASERDRRKKIN+L +SLRS LPA DQ KK+SIP T+S +KY+PELQQQVK
Sbjct: 71 VKKLNHNASERDRRKKINTLFSSLRSCLPAS-DQSKKLSIPETVSKSLKYIPELQQQVKR 129
Query: 127 LTKKKEKLLSRISQQGDAVNEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISSNY 186
L +KKE++L R+S Q D +++ K + + ++ VS + L D E + + SS
Sbjct: 130 LIQKKEEILVRVSGQRD-FELYDKQQPKAVASYLST----VSATRLGDNEVMVQVSSSKI 184
Query: 187 EEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEKT--HRLESDIITQ 244
H + ++ +E +G+ L++ SS+ + G R+FY LH QVE +++ + +++
Sbjct: 185 -----HNFSISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHLQVENMDDYKINCEELSE 239
Query: 245 KLLSIYEKKQRMF 257
++L +YEK + F
Sbjct: 240 RMLYLYEKCENSF 252
>AT5G04150.1 | Symbols: BHLH101 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:1138559-1139476
REVERSE LENGTH=240
Length = 240
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 110/164 (67%), Gaps = 11/164 (6%)
Query: 68 KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKGL 127
KKLNHNASERDRR+K+N+L +SLR+LLP DQ +K+SIP T++ V+KY+PE +Q+++ L
Sbjct: 66 KKLNHNASERDRRRKLNALYSSLRALLPLS-DQKRKLSIPMTVARVVKYIPEQKQELQRL 124
Query: 128 TKKKEKLLSRISQQGDAVNEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISSNYE 187
+++KE+LL RIS++ E+ R + + +S+ I +N WL D E A+ I +S +
Sbjct: 125 SRRKEELLKRISRKTH--QEQLRNKAMMDSIDSSSSQRIAAN-WLTDTEIAVQIATSKW- 180
Query: 188 EAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQV 231
T + +++L LE NG +++ SS+ + R+FY LH Q+
Sbjct: 181 ------TSVSDMLLRLEENGLNVISVSSSVSSTARIFYTLHLQM 218
>AT3G56980.1 | Symbols: BHLH039, ORG3 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:21086612-21087494 REVERSE LENGTH=258
Length = 258
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 121/191 (63%), Gaps = 19/191 (9%)
Query: 67 TKKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKG 126
KKLNHNASERDRR+KINSL +SLRS LPA Q KK+SIPAT+S +KY+PELQ+QVK
Sbjct: 76 VKKLNHNASERDRRRKINSLFSSLRSCLPA-SGQSKKLSIPATVSRSLKYIPELQEQVKK 134
Query: 127 LTKKKEKLLSRISQQGDAVNEESRKRKKFI-NPHHNSADFI--VSNSWLNDCEAAIHIIS 183
L KKKE+LL +IS Q R + ++ P A++I VS + L D E + I S
Sbjct: 135 LIKKKEELLVQISGQ--------RNTECYVKQPPKAVANYISTVSATRLGDNEVMVQISS 186
Query: 184 SNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEK--THRLESDI 241
S H + ++ LE + + L++ SS+ + G R+FY LH QVEK ++L +
Sbjct: 187 SKI-----HNFSISNVLSGLEEDRFVLVDMSSSRSQGERLFYTLHLQVEKIENYKLNCEE 241
Query: 242 ITQKLLSIYEK 252
++Q++L +YE+
Sbjct: 242 LSQRMLYLYEE 252
>AT2G41240.1 | Symbols: BHLH100 | basic helix-loop-helix protein 100
| chr2:17198331-17199320 REVERSE LENGTH=242
Length = 242
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 121/191 (63%), Gaps = 12/191 (6%)
Query: 68 KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKGL 127
KKLNHNASER+RRKKIN++ +SLRS LP +Q KK+S+ AT+S +KY+PELQ+QVK L
Sbjct: 62 KKLNHNASERERRKKINTMFSSLRSCLPP-TNQTKKLSVSATVSQALKYIPELQEQVKKL 120
Query: 128 TKKKEKLLSRISQQGDAV-NEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISSNY 186
KKKE+L +IS Q D V +++ K ++ + + ++ VS++ L++ E + I S
Sbjct: 121 MKKKEELSFQISGQRDLVYTDQNSKSEEGVTSYAST----VSSTRLSETEVMVQISSLQT 176
Query: 187 EEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEKTHRLESDIITQKL 246
E K ++ +E +G L+ ASS+ + G R+FY +H Q+ K ++ S+ + +L
Sbjct: 177 E-----KCSFGNVLSGVEEDGLVLVGASSSRSHGERLFYSMHLQI-KNGQVNSEELGDRL 230
Query: 247 LSIYEKKQRMF 257
L +YEK F
Sbjct: 231 LYLYEKCGHSF 241
>AT2G41240.2 | Symbols: BHLH100 | basic helix-loop-helix protein 100
| chr2:17198331-17199320 REVERSE LENGTH=241
Length = 241
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 118/191 (61%), Gaps = 13/191 (6%)
Query: 68 KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKGL 127
KKLNHNASER+RRKKIN++ +SLRS LP K+S+ AT+S +KY+PELQ+QVK L
Sbjct: 62 KKLNHNASERERRKKINTMFSSLRSCLPP--TNQTKLSVSATVSQALKYIPELQEQVKKL 119
Query: 128 TKKKEKLLSRISQQGDAV-NEESRKRKKFINPHHNSADFIVSNSWLNDCEAAIHIISSNY 186
KKKE+L +IS Q D V +++ K ++ + + ++ VS++ L++ E + I S
Sbjct: 120 MKKKEELSFQISGQRDLVYTDQNSKSEEGVTSYAST----VSSTRLSETEVMVQISSLQT 175
Query: 187 EEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGRVFYILHFQVEKTHRLESDIITQKL 246
E K ++ +E +G L+ ASS+ + G R+FY +H Q+ K ++ S+ + +L
Sbjct: 176 E-----KCSFGNVLSGVEEDGLVLVGASSSRSHGERLFYSMHLQI-KNGQVNSEELGDRL 229
Query: 247 LSIYEKKQRMF 257
L +YEK F
Sbjct: 230 LYLYEKCGHSF 240
>AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr3:1846531-1848016
FORWARD LENGTH=202
Length = 202
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 70 LNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKGL-T 128
++H A ER+RR+++N + SLRSL P +K+ + I GVI+++ ELQQ V+ L +
Sbjct: 1 MSHIAVERNRRRQMNEHLKSLRSLTPCF--YIKRGDQASIIGGVIEFIKELQQLVQVLES 58
Query: 129 KKKEKLLSR 137
KK+ K L+R
Sbjct: 59 KKRRKTLNR 67
>AT5G53210.1 | Symbols: SPCH | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:21586606-21588941
REVERSE LENGTH=364
Length = 364
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 68 KKLNHNASERDRRKKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKGL 127
+K++H ER+RRK++N + LRSL+P +K+ + I GV++Y+ ELQQ ++ L
Sbjct: 100 QKMSHVTVERNRRKQMNEHLTVLRSLMPCF--YVKRGDQASIIGGVVEYISELQQVLQSL 157
Query: 128 TKKKEK 133
KK++
Sbjct: 158 EAKKQR 163
>AT1G71200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:26835973-26837308 REVERSE
LENGTH=234
Length = 234
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 58 EMLTAPSPDTKKLNHNASERDRRKKINSLIASLRSLLP--AGQDQMKKMSIPATISGVIK 115
E+ + S KK +HNA ER RR ++++ +L +LLP + KK S P+ I VI
Sbjct: 51 EVDGSSSGAAKKQDHNAKERLRRMRLHASYLTLGTLLPDHSSSSSKKKWSAPSIIDNVIT 110
Query: 116 YLPELQQQVKGLTKKKEKLL 135
Y+P+LQ +V LT +K+KL+
Sbjct: 111 YIPKLQNEVGELTLRKQKLV 130