Miyakogusa Predicted Gene

Lj0g3v0156429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156429.1 Non Chatacterized Hit- tr|I1MUU8|I1MUU8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,72.93,0,RVT_1,Reverse
transcriptase; Intron_maturas2,Domain X; PREDICTED: SIMILAR TO
RNA-DIRECTED DNA POLYME,CUFF.9668.1
         (820 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74350.1 | Symbols:  | Intron maturase, type II family protei...   889   0.0  
AT5G04050.1 | Symbols:  | RNA-directed DNA polymerase (reverse t...   171   1e-42
AT5G04050.2 | Symbols:  | RNA-directed DNA polymerase (reverse t...   147   3e-35
ATMG00520.1 | Symbols: MATR | Intron maturase, type II family pr...    55   2e-07

>AT1G74350.1 | Symbols:  | Intron maturase, type II family protein |
           chr1:27949022-27951283 REVERSE LENGTH=753
          Length = 753

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/783 (56%), Positives = 554/783 (70%), Gaps = 34/783 (4%)

Query: 39  KHDGNFTLATELASLMEQSSEDAASKRKPMTRMELKRFLELRIKKRVKAQRAADGKFRDL 98
           K  G F+LA ELASL+E+SS       KP +RMELKR LELR+KKRVK Q   +GKF DL
Sbjct: 4   KETGMFSLAGELASLVEESSSHVDDDSKPRSRMELKRSLELRLKKRVKEQ-CINGKFSDL 62

Query: 99  MKNVISDAETLRDAYTCIKLNSNIVTATATAAVSCGDDGYFLDDVAQRLREGSFDVSANT 158
           +K VI+  ETLRDAY CI+LNSN+       +V+        D +A+ L  G FDV++NT
Sbjct: 63  LKKVIARPETLRDAYDCIRLNSNVSITERNGSVA-------FDSIAEELSSGVFDVASNT 115

Query: 159 SSISTRTRGESKEVLVLPNLKLRVVQEAVRIALEVVFRPQFSRVSHGCRSGRGRVAALRH 218
            SI  R +  +KEVLVLP++ L+VVQEA+RI LEVVF P FS++SH CRSGRGR +AL++
Sbjct: 116 FSIVARDK--TKEVLVLPSVALKVVQEAIRIVLEVVFSPHFSKISHSCRSGRGRASALKY 173

Query: 219 VCKGVVGPDWWFTXXXXXXXXXXXXXXXXCVMEDKIEDGCLYGLIQSMFDARVLNLEFGG 278
           +   +   DW FT                 VME+K+ED  L  L++SMF+ARVLNLEFGG
Sbjct: 174 INNNISRSDWCFTLSLNKKLDVSVFENLLSVMEEKVEDSSLSILLRSMFEARVLNLEFGG 233

Query: 279 FPKGDGLPQEGVLSPILMNVYLDVFDSEFHRLSMKYXXXXXXXXXXXXXALSKKCEGDCE 338
           FPKG GLPQEGVLS +LMN+YLD FD EF+R+SM++              L  K + D  
Sbjct: 234 FPKGHGLPQEGVLSRVLMNIYLDRFDHEFYRISMRHEAL----------GLDSKTDEDSP 283

Query: 339 GVAVDGDKASSSTLRRWFRRQLGGDGVGMSGVVEGDSGVRVYCCRYMDEIFFAVSGSRDC 398
           G          S LR WFRRQ G  G  +    E D  +RVYCCR+MDEI+F+VSG +  
Sbjct: 284 G----------SKLRSWFRRQAGEQG--LKSTTEQDVALRVYCCRFMDEIYFSVSGPKKV 331

Query: 399 AVNFKSEIESYLKGSLMLDVKGQADVLPCEDTRGLRFLGTLVRRSARESPAVKAVHKLKE 458
           A + +SE   +L+ SL LD+  + D  PCE T GLR LGTLVR++ RESP VKAVHKLKE
Sbjct: 332 ASDIRSEAIGFLRNSLHLDITDETDPSPCEATSGLRVLGTLVRKNVRESPTVKAVHKLKE 391

Query: 459 KVELFALQKLEAWNYGTVRIGKKWLGHGLKKVKESEIKHLADESSLLNRVSCFRKSGMET 518
           KV LFALQK EAW  GTVRIGKKWLGHGLKKVKESEIK LAD +S L+++SC RK+GMET
Sbjct: 392 KVRLFALQKEEAWTLGTVRIGKKWLGHGLKKVKESEIKGLADSNSTLSQISCHRKAGMET 451

Query: 519 DHWYKELLKIWMQDI-QTKNVKSEKSILSKCVAEPALPQELKDSFYEFMKQAEQYISSEA 577
           DHWYK LL+IWM+D+ +T   +SE+ +LSK V EP +PQEL+D+FY+F   A  Y+SSE 
Sbjct: 452 DHWYKILLRIWMEDVLRTSADRSEEFVLSKHVVEPTVPQELRDAFYKFQNAAAAYVSSET 511

Query: 578 DSILKLLPNENSSTERVMAKTEIVAPINAIKQRLLRYGLTTSKGFPRSANLLNMQDTTEI 637
            ++  LLP   S  +R +   ++VAP NAI +RL RYGL T+KG+ RS ++L + DT +I
Sbjct: 512 ANLEALLPCPQSH-DRPVFFGDVVAPTNAIGRRLYRYGLITAKGYARSNSMLILLDTAQI 570

Query: 638 VDWFEGIACRWLKWYENCANFSDIKLLIADQVRKSCIRTLAAKYRVHETEIEKRFDLELS 697
           +DW+ G+  RW+ WYE C+NF +IK LI +Q+R SCIRTLAAKYR+HE EIEKR DLELS
Sbjct: 571 IDWYSGLVRRWVIWYEGCSNFDEIKALIDNQIRMSCIRTLAAKYRIHENEIEKRLDLELS 630

Query: 698 RLPSTHDAEKEMANEALDVQAFDNDESLMYGISYSGLCLLSLARIVTEARPCNCFVVGCL 757
            +PS  D E+E+ +E LD  AFD DE L YG+S SGLCLLSLAR+V+E+RPCNCFV+GC 
Sbjct: 631 TIPSAEDIEQEIQHEKLDSPAFDRDEHLTYGLSNSGLCLLSLARLVSESRPCNCFVIGCS 690

Query: 758 SPAPRVYTLHVMERQKSPSWKTGFSTCIHPSLNKRRVGLCKQHLRDLYLGHISLQSIDFG 817
             AP VYTLH MERQK P WKTGFS CI  SLN RR+GLCKQHL+DLY+G ISLQ++DFG
Sbjct: 691 MAAPAVYTLHAMERQKFPGWKTGFSVCIPSSLNGRRIGLCKQHLKDLYIGQISLQAVDFG 750

Query: 818 AWK 820
           AW+
Sbjct: 751 AWR 753


>AT5G04050.1 | Symbols:  | RNA-directed DNA polymerase (reverse
           transcriptase) | chr5:1096092-1097894 FORWARD LENGTH=600
          Length = 600

 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 154/608 (25%), Positives = 266/608 (43%), Gaps = 95/608 (15%)

Query: 88  QRAADGKFRDLMKNVISDAETLRDAYTCIKLNSNIVTATATAAVSCGDDG------YFLD 141
           ++ + GKF  L+KN +S    L  A   + L++N          S GD        + ++
Sbjct: 55  KQYSHGKFYSLVKNAVSLPCVLLAACQNLSLSAN----------SSGDLADRVSRRFSIE 104

Query: 142 DVAQRLREGSFDVSANTSSISTRTRGESKEVLVLPNLKLRVVQEAVRIALEVVFRPQFSR 201
           ++ + +REG FD+ +      + +       LVLPNLKL+V+ EA+R+ LE+V+  +F+ 
Sbjct: 105 EMGREIREGRFDIRSCCVEFISSS-------LVLPNLKLKVLIEAIRMVLEIVYDDRFAT 157

Query: 202 VSHGCRSGRGRVAALRHVCKGVVGPDWWFTXXXXXXXXXXXXXXXXC-VMEDKIEDGCLY 260
            S+G R G GR  A+R++   V  P WWF                 C  + +KI D  L 
Sbjct: 158 FSYGGRVGMGRHTAIRYLKNSVENPRWWFRVSFAREMFEERNVDILCGFVGEKINDVMLI 217

Query: 261 GLIQSMFDARVLNLEFGGFPKGDGLPQEGVLSPILMNVYLDVFDSEFHRLSMKYXXXXXX 320
            +I+ +F+  +L +E GG   G G PQE  L  IL+NVY D  D E   L +K       
Sbjct: 218 EMIKKLFEFGILKIELGGCNSGRGFPQECGLCSILINVYFDGLDKEIQDLRLKM------ 271

Query: 321 XXXXXXXALSKKCEGDCEGVAVDGDKASSSTLRRWFRRQLGGDGVGMSGVVEGDSGVRVY 380
                      K +    G    GD+ S+  +  +F+                   V +Y
Sbjct: 272 -----------KVKNPRVGT---GDEESTGNV--FFK------------------PVNIY 297

Query: 381 CCRYMDEIFFAVSGSRDCAVNFKSEIESYLKGSLMLDVKGQADVLPCEDTRGLRFLGTL- 439
             RY+DEI    SGS+   ++ K  I   L+  L L V      +    +  + FLG   
Sbjct: 298 AVRYLDEILVITSGSKMLTMDLKKRIVDILEQRLELRVDRLNTSIHSAVSEKINFLGMYL 357

Query: 440 ------VRRSARESPAVKAVHKLKEKVELFALQKLEAWNYGTVRIGKKWLGHGLKKVKES 493
                 V R  +   AV+A+ K + + ++  L+   A       +G K   H LKK+K+S
Sbjct: 358 QAVPPSVLRPPKSEKAVRAMKKYQRQKDVRKLELRNARERNRKTLGLKIFRHVLKKIKQS 417

Query: 494 EIKHLADESSLLNRVSCFRKSGMETDHWYKELLKIWMQDIQTK----NVKSEKSILSKCV 549
                  E  + N V    +S      W +E+++ +M  ++ +     + +    LS   
Sbjct: 418 --NGFKFEGEIENEVRDIFQS------WGEEVMQDFMGSLEERWKWHWLLTRGDFLSLRH 469

Query: 550 AEPALPQELKDSFYEFMKQAEQYIS-SEADSILKLLPN-----------ENSSTERVMAK 597
               LPQ+L D++ EF +Q +++++ ++A  +L+               E +  +     
Sbjct: 470 IREKLPQDLIDAYDEFQEQVDKHLAPTQAKKVLEDEERRVEEEEEQRYAERTVEDLTKLC 529

Query: 598 TEIVAPINAIKQRLLRYGLTTSKGFPRSANLLNMQDTTEIVDWFEGIACRWLKWYENCAN 657
            ++ AP   +++ +   G T S G PR    L   + ++I+ W+ G+  +WL ++  C N
Sbjct: 530 MKVSAPEELVRKAIKLVGFTNSMGRPRPIIHLVTLEDSDIIKWYAGVGRKWLDFFCCCHN 589

Query: 658 FSDIKLLI 665
           +  +K L+
Sbjct: 590 YKMVKSLV 597


>AT5G04050.2 | Symbols:  | RNA-directed DNA polymerase (reverse
           transcriptase) | chr5:1096092-1098512 FORWARD LENGTH=695
          Length = 695

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 135/513 (26%), Positives = 226/513 (44%), Gaps = 84/513 (16%)

Query: 88  QRAADGKFRDLMKNVISDAETLRDAYTCIKLNSNIVTATATAAVSCGDDG------YFLD 141
           ++ + GKF  L+KN +S    L  A   + L++N          S GD        + ++
Sbjct: 55  KQYSHGKFYSLVKNAVSLPCVLLAACQNLSLSAN----------SSGDLADRVSRRFSIE 104

Query: 142 DVAQRLREGSFDVSANTSSISTRTRGESKEVLVLPNLKLRVVQEAVRIALEVVFRPQFSR 201
           ++ + +REG FD+ +      + +       LVLPNLKL+V+ EA+R+ LE+V+  +F+ 
Sbjct: 105 EMGREIREGRFDIRSCCVEFISSS-------LVLPNLKLKVLIEAIRMVLEIVYDDRFAT 157

Query: 202 VSHGCRSGRGRVAALRHVCKGVVGPDWWFTXXXXXXXXXXXXXXXXC-VMEDKIEDGCLY 260
            S+G R G GR  A+R++   V  P WWF                 C  + +KI D  L 
Sbjct: 158 FSYGGRVGMGRHTAIRYLKNSVENPRWWFRVSFAREMFEERNVDILCGFVGEKINDVMLI 217

Query: 261 GLIQSMFDARVLNLEFGGFPKGDGLPQEGVLSPILMNVYLDVFDSEFHRLSMKYXXXXXX 320
            +I+ +F+  +L +E GG   G G PQE  L  IL+NVY D  D E   L +K       
Sbjct: 218 EMIKKLFEFGILKIELGGCNSGRGFPQECGLCSILINVYFDGLDKEIQDLRLKM------ 271

Query: 321 XXXXXXXALSKKCEGDCEGVAVDGDKASSSTLRRWFRRQLGGDGVGMSGVVEGDSGVRVY 380
                      K +    G    GD+ S+  +  +F+                   V +Y
Sbjct: 272 -----------KVKNPRVGT---GDEESTGNV--FFK------------------PVNIY 297

Query: 381 CCRYMDEIFFAVSGSRDCAVNFKSEIESYLKGSLMLDVKGQADVLPCEDTRGLRFLGTL- 439
             RY+DEI    SGS+   ++ K  I   L+  L L V      +    +  + FLG   
Sbjct: 298 AVRYLDEILVITSGSKMLTMDLKKRIVDILEQRLELRVDRLNTSIHSAVSEKINFLGMYL 357

Query: 440 ------VRRSARESPAVKAVHKLKEKVELFALQKLEAWNYGTVRIGKKWLGHGLKKVKES 493
                 V R  +   AV+A+ K + + ++  L+   A       +G K   H LKK+K+S
Sbjct: 358 QAVPPSVLRPPKSEKAVRAMKKYQRQKDVRKLELRNARERNRKTLGLKIFRHVLKKIKQS 417

Query: 494 EIKHLADESSLLNRVSCFRKSGMETDHWYKELLKIWMQDIQTK----NVKSEKSILSKCV 549
                  E  + N V    +S      W +E+++ +M  ++ +     + +    LS   
Sbjct: 418 --NGFKFEGEIENEVRDIFQS------WGEEVMQDFMGSLEERWKWHWLLTRGDFLSLRH 469

Query: 550 AEPALPQELKDSFYEFMKQAEQYIS-SEADSIL 581
               LPQ+L D++ EF +Q +++++ ++A  +L
Sbjct: 470 IREKLPQDLIDAYDEFQEQVDKHLAPTQAKKVL 502


>ATMG00520.1 | Symbols: MATR | Intron maturase, type II family
           protein | chrM:144294-146312 REVERSE LENGTH=672
          Length = 672

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 173 LVLPNLKLRVVQEAVRIALEVVFRPQFSRVSHGCRSGRGRVAALRHVCKGVVGPDWWFTX 232
           +VLP  K  +++EA+R+ LE ++ P+F   SH  RSG+G  + LR + +      W+   
Sbjct: 9   VVLPIEK--IMKEAIRMVLESIYDPEFPDTSH-FRSGQGCHSVLRRIKEEWGISRWFLEF 65

Query: 233 XXXXXXXXXXXXXXXCVMEDKIEDGCLYGLIQSMFDA-RVLNLEFGGFPKGDGLPQEGVL 291
                           +++++I+D   +  IQ +F A R++ +E G +     +P   +L
Sbjct: 66  DIRKCFHTIDRHRLIQILKEEIDDPKFFYSIQKVFSAGRLVGVERGPY----SVPHSVLL 121

Query: 292 SPILMNVYLDVFDSEFHRLSMKY 314
           S +  N+YL   D E  R+  KY
Sbjct: 122 SALPGNIYLHKLDQEIGRIRQKY 144