Miyakogusa Predicted Gene

Lj0g3v0156409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156409.1 tr|G7IZH3|G7IZH3_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_3g029670 PE=4 SV=1,34.58,6e-19,seg,NULL;
DUF295,Protein of unknown function DUF295,CUFF.9667.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17030.1 | Symbols:  | F-box family protein with a domain of ...    82   3e-16
AT2G17036.1 | Symbols:  | F-box family protein with a domain of ...    60   1e-09

>AT2G17030.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr2:7399108-7400650 FORWARD
           LENGTH=407
          Length = 407

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 109/240 (45%), Gaps = 36/240 (15%)

Query: 1   MLLTIHESEKLAVFGYGDGDDERWTIMPAPDMSTNYHDVSAFNGRLYAVESGGRTVVVGP 60
           +LLTIH S KLAVF   D     WT++   DM + Y DV  F+GR +AV++ GRTVVV  
Sbjct: 175 VLLTIHVSGKLAVFRSWD---RAWTVIN--DMPSPYDDVMLFDGRFFAVDNNGRTVVVDY 229

Query: 61  DSVLEEEPFAEHYGPNTGCCYN---EKFXXXXXXXXXXXXKHGGFCEDIKYKYEGDNDID 117
            S+      +  +G +         E                 GF E+I   +E      
Sbjct: 230 SSLKLTLVASPVFGGDKKFLIESCGEMLLVDMYLSLEAVEGDPGFVEEI---FEHPAFYM 286

Query: 118 EYKEGMFRVFRFGXXXXXXXXXXSWVHVRNVRDRVLFIGDDCAFSVSASD-LGVDEGNYV 176
             +   F+V+RF           SWV V ++ D++LF+GDD  FS SASD L + +G+ V
Sbjct: 287 NERTVKFKVYRF------VEREESWVDVYDLEDKMLFLGDDSTFSASASDILPLCDGSSV 340

Query: 177 VFRDDDLKSGIGVFPLDDVGWYGDGILHLLDY-----------PGFSSLFRPPPDWAMLH 225
            F  +       VF  +D+G   D  L + D+           P ++ LF PPP W   H
Sbjct: 341 FFNGN-------VFNGEDLGAMQDRDLGVFDFRSGKIELVQKLPEYAKLFWPPPPWITSH 393


>AT2G17036.1 | Symbols:  | F-box family protein with a domain of
           unknown function (DUF295) | chr2:7403856-7405219 FORWARD
           LENGTH=428
          Length = 428

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 101/247 (40%), Gaps = 62/247 (25%)

Query: 1   MLLTIHESEKLAVFGYGDGDDERWTIMPAPDMSTNYHDVSAFNGRLYAVESGGRTVVV-- 58
           +LLTI E  KLAVF   D +   WT++    + +   D+  F+GR +A++  GRTVVV  
Sbjct: 172 VLLTILEYGKLAVFRSWDRE---WTVI-NDYIPSRCQDLIMFDGRFFAIDYNGRTVVVDY 227

Query: 59  --------------GPDSVLEEEPFAEHYGPNTGCCYNEKFXXXXXXXXXXXXKHGGFCE 104
                         G D     E   E +  +   C NEK               GGF  
Sbjct: 228 SSFKLTLAANPLIGGGDKKFLIESCGEMFLVDIEFCLNEKPEFT-----------GGF-- 274

Query: 105 DIKYKYEGDNDIDEYKEGMFRVFRFGXXXXXXXXXXSWVHVRNVRDRVLFIGDDCAFSVS 164
              Y Y  +  +  YK   F++               WV V ++ D++ F+GDD  FS S
Sbjct: 275 ---YSYFNETTVS-YKFKFFKLVE---------REKRWVEVEDLGDKMFFLGDDSTFSAS 321

Query: 165 ASDL---GVDEGNYVVFRDDDLK------SGIGVFPLDDVGWYGDGILHLLD-YPGFSSL 214
            +D+    V  G++V F   +          +GVF       +  G   L++  P ++ L
Sbjct: 322 TADIIPRCVGTGSFVFFYTHEESLVVMDDRNLGVFD------FRSGKTELVNKLPEYAKL 375

Query: 215 FRPPPDW 221
           F PPP W
Sbjct: 376 FWPPPPW 382