Miyakogusa Predicted Gene

Lj0g3v0156239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156239.1 tr|F4ITP5|F4ITP5_ARATH TraB family protein
OS=Arabidopsis thaliana GN=At2g32340 PE=4 SV=1,40.71,2e-19,
,gene.Ljchr0_pseudomol_20120828.path1.gene15742.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05270.1 | Symbols:  | TraB family protein | chr1:1531806-153...   103   2e-23
AT2G32340.1 | Symbols:  | TraB family protein | chr2:13732247-13...    97   3e-21

>AT1G05270.1 | Symbols:  | TraB family protein |
           chr1:1531806-1534305 REVERSE LENGTH=371
          Length = 371

 Score =  103 bits (258), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/135 (42%), Positives = 73/135 (54%), Gaps = 44/135 (32%)

Query: 2   LPVELSRNVLFLSCESSAEGGVCDVYVLGTCHVS----------------EAVFLELCWR 45
           LP EL+++V+ L+CES+A+GG CDVY++GT HVS                E VF+ELC  
Sbjct: 87  LPEELAKSVVILTCESTADGGSCDVYLVGTAHVSKQSCLEVEAIISILKPEVVFVELCSS 146

Query: 46  RRGALTRKTL----------------------------KIGSELGVIPGSEFRVAYEEAN 77
           R   L  +TL                            KI S L V PG+EFRVAYEEA 
Sbjct: 147 RLSVLKPQTLKIPTMSDMIESWKQKQNTFGILYGWFLAKIASHLEVFPGAEFRVAYEEAI 206

Query: 78  KYGGRVALGDRPIQV 92
           KYGG+V LGDRP+Q+
Sbjct: 207 KYGGKVILGDRPVQI 221


>AT2G32340.1 | Symbols:  | TraB family protein |
           chr2:13732247-13734361 FORWARD LENGTH=360
          Length = 360

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 73/140 (52%), Gaps = 49/140 (35%)

Query: 2   LPVELSRNVLFLSCESSAEGGVCDVYVLGTCHVS----------------EAVFLELCWR 45
           LP E +++V+ L+CES+AEGG CDVY++GT HVS                +AVFLELC  
Sbjct: 73  LPEEFAKSVMVLTCESTAEGGSCDVYLVGTAHVSQESCREVEAVISALKPQAVFLELCSS 132

Query: 46  RRGALTRKTLKI---------------------------------GSELGVIPGSEFRVA 72
           R   LT +T+K+                                   +L V PG+EFRV 
Sbjct: 133 RLSILTPQTVKVCCQEPPTWMEMIYMWKKKHNLFEIVYGYILAKAAKKLEVFPGAEFRVG 192

Query: 73  YEEANKYGGRVALGDRPIQV 92
           +EEANKYGGRV LGDR +Q+
Sbjct: 193 FEEANKYGGRVFLGDRSVQI 212