Miyakogusa Predicted Gene

Lj0g3v0156189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0156189.1 Non Chatacterized Hit- tr|E1Z2L9|E1Z2L9_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,31.94,2e-18,TraB,Pheromone shutdown, TraB; seg,NULL;
SUBFAMILY NOT NAMED,NULL; PHEROMONE SHUTDOWN PROTEIN,NULL,CUFF.9783.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05270.1 | Symbols:  | TraB family protein | chr1:1531806-153...   172   8e-44
AT2G32340.1 | Symbols:  | TraB family protein | chr2:13732247-13...   158   9e-40
AT5G52030.2 | Symbols:  | TraB family protein | chr5:21128291-21...    55   2e-08
AT5G52030.1 | Symbols:  | TraB family protein | chr5:21128819-21...    54   3e-08

>AT1G05270.1 | Symbols:  | TraB family protein |
           chr1:1531806-1534305 REVERSE LENGTH=371
          Length = 371

 Score =  172 bits (435), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 97/111 (87%)

Query: 1   MPLWHKTKLVYNLLFQAVFLPSSDDLNKMLKEMDDNDMLTLVIQEMSKEFPTLMETLVHE 60
           MPLWHK K +Y++LFQAVFLP +++L KMLK+MD+ DM+TLVIQEMSKEFPTLM+T+VHE
Sbjct: 230 MPLWHKVKFLYSILFQAVFLPGAEELEKMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHE 289

Query: 61  RDKYMSCALLRVACQNSCVVAVVGKGHLQGIKKHWKQHVVMSDLMTIPSPK 111
           RD+YM+ +LLRVA  +S VVAV+GKGH+ GIKK+WKQ + M+DLM IPS K
Sbjct: 290 RDQYMASSLLRVASDHSSVVAVIGKGHINGIKKNWKQPITMNDLMEIPSDK 340


>AT2G32340.1 | Symbols:  | TraB family protein |
           chr2:13732247-13734361 FORWARD LENGTH=360
          Length = 360

 Score =  158 bits (400), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 91/109 (83%)

Query: 1   MPLWHKTKLVYNLLFQAVFLPSSDDLNKMLKEMDDNDMLTLVIQEMSKEFPTLMETLVHE 60
           MPLWHK KLVY+++ QAVFLP+  +L KMLK++ D DMLTL IQEMS EFPTLMETLVHE
Sbjct: 221 MPLWHKIKLVYSIVSQAVFLPNPKELEKMLKDLGDGDMLTLAIQEMSTEFPTLMETLVHE 280

Query: 61  RDKYMSCALLRVACQNSCVVAVVGKGHLQGIKKHWKQHVVMSDLMTIPS 109
           RDKYM+  LLR+A ++S VVAVVG+GHLQGIKK+W Q + + +LM +P+
Sbjct: 281 RDKYMAYQLLRIASEHSSVVAVVGRGHLQGIKKNWNQTINIKELMELPT 329


>AT5G52030.2 | Symbols:  | TraB family protein |
           chr5:21128291-21130034 FORWARD LENGTH=402
          Length = 402

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 31  KEMDDNDMLTLVIQEMSKEFPTLMETLVHERDKYMSCALLRVACQNSC--VVAVVGKGHL 88
           +E D+N     + + +S  +P L+  L+HERD Y++ +L R    N C  VV V+GKGH+
Sbjct: 273 QETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHM 332

Query: 89  QGI 91
            G+
Sbjct: 333 NGV 335


>AT5G52030.1 | Symbols:  | TraB family protein |
           chr5:21128819-21130034 FORWARD LENGTH=258
          Length = 258

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 31  KEMDDNDMLTLVIQEMSKEFPTLMETLVHERDKYMSCALLRVACQNSC--VVAVVGKGHL 88
           +E D+N     + + +S  +P L+  L+HERD Y++ +L R    N C  VV V+GKGH+
Sbjct: 129 QETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHM 188

Query: 89  QGI 91
            G+
Sbjct: 189 NGV 191