Miyakogusa Predicted Gene

Lj0g3v0155879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0155879.1 Non Chatacterized Hit- tr|I1JZC3|I1JZC3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48587 PE,90.15,0,no
description,ATPase-like, ATP-binding domain; no description,Ribosomal
protein S5 domain 2-type fo,gene.g11938.t1.1
         (315 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09140.1 | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:58...   442   e-124
AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putat...   125   3e-29
AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 | c...    97   1e-20

>AT4G09140.1 | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 |
           chr4:5817107-5821035 REVERSE LENGTH=737
          Length = 737

 Score =  442 bits (1138), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/263 (79%), Positives = 237/263 (90%)

Query: 2   EPPKIQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSD 61
           EPPKIQRL ESVVNRIAAGEVIQRPVSAVKEL+ENSLDA S+SI++++KDGGLKLIQVSD
Sbjct: 25  EPPKIQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSD 84

Query: 62  DGHGVRFEDLPILCERHTTSKLSAFEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGKL 121
           DGHG+R EDLPILCERHTTSKL+ FEDL S+ SMGFRGEALASMTYV HVTVTTITKG++
Sbjct: 85  DGHGIRREDLPILCERHTTSKLTKFEDLFSLSSMGFRGEALASMTYVAHVTVTTITKGQI 144

Query: 122 HGYRVSYRDGVMEHEPKPCAAVKGTQIMVENLFYNMAARRKTLQSSSDDYSKIVDLVSRF 181
           HGYRVSYRDGVMEHEPK CAAVKGTQIMVENLFYNM ARRKTLQ+S+DDY KIVDL+SR 
Sbjct: 145 HGYRVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSADDYGKIVDLLSRM 204

Query: 182 AIHHTNVGFSCRKHGAVKADVHTVSTSSRLDAIRSVYGVSVARNLVEIEASDNDPSTSCF 241
           AIH+ NV FSCRKHGAVKADVH+V + SRLD+IRSVYGVSVA+NL+++E S  D S   F
Sbjct: 205 AIHYNNVSFSCRKHGAVKADVHSVVSPSRLDSIRSVYGVSVAKNLMKVEVSSCDSSGCTF 264

Query: 242 EMHGYISNANHAAKKITMVLFIN 264
           +M G+ISN+N+ AKK  +VLFIN
Sbjct: 265 DMEGFISNSNYVAKKTILVLFIN 287


>AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putative
           | chr4:1076306-1080510 REVERSE LENGTH=923
          Length = 923

 Score =  125 bits (315), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/273 (32%), Positives = 145/273 (53%), Gaps = 13/273 (4%)

Query: 6   IQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKLIQVSDDGHG 65
           I+ ++ +V++RI +G+VI    SAVKEL+ENSLDAG+TSI + ++D G    QV D+G G
Sbjct: 17  IRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGCG 76

Query: 66  VRFEDLPILCERHTTSKLSAFEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGKLHGYR 125
           +   +  +L  +H TSKL  F DL ++ + GFRGEAL+S+  +G++TV T TK +     
Sbjct: 77  ISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTKNEPVATL 136

Query: 126 VSY-RDGVMEHEPKPCAAVKGTQIMVENLFYNMAARRKTLQSS-SDDYSKIVDLVSRFAI 183
           +++   G++  E K    + GT + V  LF N+  R K  + +   +Y K+V L++ +A+
Sbjct: 137 LTFDHSGLLTAEKKTARQI-GTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVSLLNAYAL 195

Query: 184 HHTNVGFSCRKHGAVKADVHTVSTSSR---LDAIRSVYGVSVARNLVEIEASDNDPSTSC 240
               V F C            ++T  R    D I +V+G+S   +L  +       S  C
Sbjct: 196 IAKGVRFVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSLQPVSIC---VSEDC 252

Query: 241 FEMHGYISNANHAAKK---ITMVLFINGINVNL 270
             + G++S       +        FING  V++
Sbjct: 253 -RVEGFLSKPGQGTGRNLADRQYFFINGRPVDM 284


>AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 |
           chr4:16865488-16871527 FORWARD LENGTH=1169
          Length = 1169

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 14/245 (5%)

Query: 6   IQRLSESVVNRIAAGEVIQRPVSAVKELLENSLDAGSTSINLLIKDGGLKL-IQVSDDGH 64
           I+ L E V + + +G ++      V+EL+ NSLDAG+T +++ +  G +   ++V DDG 
Sbjct: 4   IKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFV--GVVSCSVKVVDDGS 61

Query: 65  GVRFEDLPILCERHTTSKLSAFEDLQSI-KSMGFRGEALASMTYVGHVTVTTITKGKLHG 123
           GV  +DL +L ER+ TSK   F ++++  ++ GFRGEALAS++ +  + V T   G+ +G
Sbjct: 62  GVSRDDLVLLGERYATSKFHDFTNVETASETFGFRGEALASISDISLLEVRTKAIGRPNG 121

Query: 124 YRVSYRDGVMEH-----EPKPCAAVKGTQIMVENLFYNMAARRKTLQSSSDD-YSKIVDL 177
           YR   +     H     + K      GT + V +LFY+   RRK +QSS       I   
Sbjct: 122 YRKVMKGSKCLHLGIDDDRKD----SGTTVTVRDLFYSQPVRRKYMQSSPKKVLESIKKC 177

Query: 178 VSRFAIHHTNVGFSCRKHGAVKADVHTVSTSSRLDAIRSVYGVSVARNLVEIEASDNDPS 237
           V R A+ H+NV FS     + +    T  +SS    +    G     +L ++  +D   +
Sbjct: 178 VFRIALVHSNVSFSVLDIESDEELFQTNPSSSAFSLLMRDAGTEAVNSLCKVNVTDGMLN 237

Query: 238 TSCFE 242
            S FE
Sbjct: 238 VSGFE 242