Miyakogusa Predicted Gene

Lj0g3v0155229.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0155229.1 Non Chatacterized Hit- tr|I3J7C6|I3J7C6_ORENI
Uncharacterized protein OS=Oreochromis niloticus
GN=WD,26.15,4e-18,WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; seg,NULL; WD40
repeats,WD,CUFF.9645.1
         (389 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45760.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   412   e-115
AT5G45760.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...   361   e-100
AT1G61210.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    52   7e-07
AT1G61210.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...    52   7e-07

>AT5G45760.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:18561121-18563005 FORWARD LENGTH=360
          Length = 360

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/372 (54%), Positives = 271/372 (72%), Gaps = 21/372 (5%)

Query: 21  KPRRLKGHKDSTNCCIASPQNPHLIVTSGDDGFVCWFDLRCSDEAQLVMDVSTEAVVSLC 80
           +PR+L+GHK +  CCIAS   P +++TSG+DG +CWFDLRC D  Q ++DV TE V SLC
Sbjct: 7   EPRKLRGHKSTATCCIASRDRPGIVLTSGEDGCICWFDLRCKD-VQFIIDVGTEPVSSLC 65

Query: 81  FKPGKEDNIYVSSGKEINCFDVR-LATAKWEPLESYNYNKEEINKVTCNSRSSFLAAADD 139
           FK G E+ +Y S G EI  FDV  L+   W+PLESYNYNK+E+N+V CN RSSFLA+ADD
Sbjct: 66  FKTGNENILYASCGNEIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFLASADD 125

Query: 140 SGEVKIIDIRQQCLHKTLRAGHTSICSSVEFLPWRSWEVISGGLDSALVWWDFSNGRHNK 199
           SG+VKIID+ Q+CL+KTLRAGHTSICSSV+F+PWR WEVI+GGLDS LV WDFS GR  K
Sbjct: 126 SGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEVITGGLDSKLVLWDFSKGRSQK 185

Query: 200 IANFGNVSSSNAGQCYNPSFIHAIAVPETDMIDKLDKICXXXXXXXXXXXXXEAEIACMK 259
           I +FG+ +++N+GQC NP+F+H+IA+PE DM+DKLDKIC                 A  +
Sbjct: 186 IIDFGSDTNNNSGQCLNPAFVHSIAIPEMDMVDKLDKIC-----------------AVAR 228

Query: 260 SKGFSN--SRKGSQSRPKQGSSTSNTDADQNGRRRLQLDYTLGGHNAAVSSLEFSLFGER 317
             G  N  + +   SR    S  S++ +  N  +R+ LDY++GGHN+AVS + FSLF E+
Sbjct: 229 GDGIVNLINIESELSRKGTSSKGSSSSSSNNVVKRVCLDYSVGGHNSAVSCVAFSLFQEK 288

Query: 318 GKFLVSGGNDRLVKVWNWSSYRDAGISDGNNDILHLNIGVPQKVNCLCTTTADTDNLVVC 377
           G+FL+SGGND+ VK+W+     D   ++ N+D+LHLNI + +KVN LCT  +D++NLVVC
Sbjct: 289 GRFLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLHLNINLSKKVNWLCTNQSDSENLVVC 348

Query: 378 DTSKTVKVYSVT 389
           DT++ VKVYS++
Sbjct: 349 DTTRVVKVYSIS 360


>AT5G45760.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:18561121-18563005 FORWARD LENGTH=334
          Length = 334

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/372 (49%), Positives = 251/372 (67%), Gaps = 47/372 (12%)

Query: 21  KPRRLKGHKDSTNCCIASPQNPHLIVTSGDDGFVCWFDLRCSDEAQLVMDVSTEAVVSLC 80
           +PR+L+GHK +  CCIAS   P +++TSG+DG +CWFDLRC D  Q ++DV TE V SLC
Sbjct: 7   EPRKLRGHKSTATCCIASRDRPGIVLTSGEDGCICWFDLRCKD-VQFIIDVGTEPVSSLC 65

Query: 81  FKPGKEDNIYVSSGKEINCFDVR-LATAKWEPLESYNYNKEEINKVTCNSRSSFLAAADD 139
           FK G E+ +Y S G EI  FDV  L+   W+PLESYNYNK+E+N+V CN RSSFLA+ADD
Sbjct: 66  FKTGNENILYASCGNEIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFLASADD 125

Query: 140 SGEVKIIDIRQQCLHKTLRAGHTSICSSVEFLPWRSWEVISGGLDSALVWWDFSNGRHNK 199
           SG+VKIID+ Q+CL+KTLRAGHTSICSSV+F+PWR WE                      
Sbjct: 126 SGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWE---------------------- 163

Query: 200 IANFGNVSSSNAGQCYNPSFIHAIAVPETDMIDKLDKICXXXXXXXXXXXXXEAEIACMK 259
               G+ +++N+GQC NP+F+H+IA+PE DM+DKLDKIC                 A  +
Sbjct: 164 ----GSDTNNNSGQCLNPAFVHSIAIPEMDMVDKLDKIC-----------------AVAR 202

Query: 260 SKGFSN--SRKGSQSRPKQGSSTSNTDADQNGRRRLQLDYTLGGHNAAVSSLEFSLFGER 317
             G  N  + +   SR    S  S++ +  N  +R+ LDY++GGHN+AVS + FSLF E+
Sbjct: 203 GDGIVNLINIESELSRKGTSSKGSSSSSSNNVVKRVCLDYSVGGHNSAVSCVAFSLFQEK 262

Query: 318 GKFLVSGGNDRLVKVWNWSSYRDAGISDGNNDILHLNIGVPQKVNCLCTTTADTDNLVVC 377
           G+FL+SGGND+ VK+W+     D   ++ N+D+LHLNI + +KVN LCT  +D++NLVVC
Sbjct: 263 GRFLISGGNDKTVKIWDCFKCLDPNNNNNNSDLLHLNINLSKKVNWLCTNQSDSENLVVC 322

Query: 378 DTSKTVKVYSVT 389
           DT++ VKVYS++
Sbjct: 323 DTTRVVKVYSIS 334


>AT1G61210.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:22564785-22571555 FORWARD LENGTH=1181
          Length = 1181

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 27  GHKDSTNCCIASPQNPHLIVTSGDDGFVCWFDLRCSDEAQLVMDV--STEAVVSLCFKPG 84
            H  + NC     +   L +T GDD  V   +L    +   +M +   T AV S+ F   
Sbjct: 13  AHSANVNCLSIGKKTSRLFITGGDDYKV---NLWAIGKPTSLMSLCGHTSAVDSVAFDSA 69

Query: 85  KEDNIYVSSGKEINCFDVRLATAKWEPLESYNYNKEEINKVTCNSRSSFLAAADDSGEVK 144
           +   +  +S   I  +DV  A      + ++  ++   + V  +    FLA+      +K
Sbjct: 70  EVLVLAGASSGVIKLWDVEEAKM----VRAFTGHRSNCSAVEFHPFGEFLASGSSDANLK 125

Query: 145 IIDIRQQCLHKTLRAGHTSICSSVEFLPWRSWEVISGGLDSALVWWDFSNGR 196
           I DIR++   +T + GH+   S++ F P   W V+SGGLD+ +  WD + G+
Sbjct: 126 IWDIRKKGCIQTYK-GHSRGISTIRFTPDGRW-VVSGGLDNVVKVWDLTAGK 175


>AT1G61210.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:22564785-22571555 FORWARD LENGTH=1179
          Length = 1179

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 27  GHKDSTNCCIASPQNPHLIVTSGDDGFVCWFDLRCSDEAQLVMDV--STEAVVSLCFKPG 84
            H  + NC     +   L +T GDD  V   +L    +   +M +   T AV S+ F   
Sbjct: 13  AHSANVNCLSIGKKTSRLFITGGDDYKV---NLWAIGKPTSLMSLCGHTSAVDSVAFDSA 69

Query: 85  KEDNIYVSSGKEINCFDVRLATAKWEPLESYNYNKEEINKVTCNSRSSFLAAADDSGEVK 144
           +   +  +S   I  +DV  A      + ++  ++   + V  +    FLA+      +K
Sbjct: 70  EVLVLAGASSGVIKLWDVEEAKM----VRAFTGHRSNCSAVEFHPFGEFLASGSSDANLK 125

Query: 145 IIDIRQQCLHKTLRAGHTSICSSVEFLPWRSWEVISGGLDSALVWWDFSNGR 196
           I DIR++   +T + GH+   S++ F P   W V+SGGLD+ +  WD + G+
Sbjct: 126 IWDIRKKGCIQTYK-GHSRGISTIRFTPDGRW-VVSGGLDNVVKVWDLTAGK 175