Miyakogusa Predicted Gene

Lj0g3v0154809.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0154809.1 tr|G5BKU6|G5BKU6_HETGA DNA excision repair
protein ERCC-1 OS=Heterocephalus glaber GN=GW7_13342
PE=4,46.48,0.0000000001,Rad10,DNA repair protein rad10; no
description,NULL; seg,NULL; Q9FWD8_ORYSA_Q9FWD8;,DNA repair
prote,CUFF.9658.1
         (398 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05210.1 | Symbols: ERCC1, UVR7 | nucleotide repair protein, ...   439   e-123

>AT3G05210.1 | Symbols: ERCC1, UVR7 | nucleotide repair protein,
           putative | chr3:1479591-1481823 FORWARD LENGTH=410
          Length = 410

 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/374 (59%), Positives = 263/374 (70%), Gaps = 16/374 (4%)

Query: 13  KKKSSSVVIRIPSYQEVVESSQARSTPPSLFVPSQTFSQAFAFIKSSEFYXXXXXXXXXX 72
           +K  + +VI +PSYQEV+ESSQ +STPPSLF PSQ+FSQAFAF+KSS+ Y          
Sbjct: 20  RKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAFAFVKSSDVYSPPPPSSAAA 79

Query: 73  XXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNAILVSHRQKGNPLLK 124
                                                      RNAILVSHRQKGNPLLK
Sbjct: 80  SSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSNTTQNRNAILVSHRQKGNPLLK 139

Query: 125 HIRNVKWTFADVVCDYLLGQSSCAIYISLRYHLLHPDYLYYRIRELQKNFKLRXXXXXXX 184
           HIRNVKW F+D++ DY+LGQ+SCA+Y+SLRYHLLHPDYLY+RIRELQKNFKL        
Sbjct: 140 HIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQKNFKLSVVLCHVD 199

Query: 185 XXXXXKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSR 244
                KPLLEVTKTALLHDCTLLC WS+ EC RYLETIKVYENKPAD+IQGQMDTDYLSR
Sbjct: 200 VEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYENKPADLIQGQMDTDYLSR 259

Query: 245 LTHALTTVRHVNKTDVVTLGTTFGSLSHIMGASMEDLARCPGIGERKVKRLFDTFHEPFK 304
           L H+LT++RHVNK+DVVTLG+TFGSL+HI+ ASMEDLARCPGIGERKVKRL+DTFHEPFK
Sbjct: 260 LNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGIGERKVKRLYDTFHEPFK 319

Query: 305 RVESSRQAVPETSAQNKPASPDPLMRNNAESSSLIKDKD-VEDVSKRRKE--EPELTVKS 361
           R  SS  +V E      P    P+ ++      + +D+D VED  KR+K+  EPE TVK+
Sbjct: 320 RATSSYPSVVE-----PPIPEAPVEKDVNSEEPVEEDEDFVEDSRKRKKKEPEPEKTVKT 374

Query: 362 ALSAAFAKYSDRVG 375
           ALSA FA+YSDR+ 
Sbjct: 375 ALSAVFARYSDRLS 388