Miyakogusa Predicted Gene

Lj0g3v0154719.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0154719.1 tr|A9S0J3|A9S0J3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_72978
,40.17,0.0000000000001,GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE
1,NULL,CUFF.9567.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17510.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   285   2e-77
AT3G03460.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   188   2e-48

>AT5G17510.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:5770518-5772343
           REVERSE LENGTH=369
          Length = 369

 Score =  285 bits (729), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/217 (70%), Positives = 179/217 (82%), Gaps = 16/217 (7%)

Query: 10  SC-RLLPYHVVADYEAEEDDRILDSDTTGQVLSRSQQWDNNIAAKIAEFTATFEKQALAF 68
           +C RLLPYHVVADYEAEEDDRILDSD TGQ LSRSQQWDNNIAAK+AEFTATFEKQALAF
Sbjct: 157 ACERLLPYHVVADYEAEEDDRILDSDPTGQALSRSQQWDNNIAAKVAEFTATFEKQALAF 216

Query: 69  NIISQKRNLGEFRSEERLMIEQALLQEEKRALM----------AGREAHEAKLRMAAMYQ 118
           NII++KR +GEFRSEERLM+EQALLQ+E++AL+          AGREA EAKLRMAA+ Q
Sbjct: 217 NIITRKRAMGEFRSEERLMVEQALLQDERKALIELKAEMDREKAGREAQEAKLRMAALAQ 276

Query: 119 AEQARAESHSHAEMMSRAPIRGSALGSQGSGDMMGHDMGEQDQGGHPGDMMNGWGNNAHR 178
           A Q    S SHAE+M+R P+R +A+G+QGS   + H+MGEQ +  +P +MMNGWGNN+ R
Sbjct: 277 AGQ----SQSHAEIMARNPLRANAVGNQGSNIQLSHEMGEQGRNMNPDEMMNGWGNNSQR 332

Query: 179 EEKEPSEDFLND-EAENGDTGTQDGWREVGEFDLNAR 214
           E+KEPSEDFLND E ENG+TG Q+ WRE GEFDLN+R
Sbjct: 333 EDKEPSEDFLNDEENENGETGEQENWREAGEFDLNSR 369


>AT3G03460.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G17510.1); Has 19732 Blast hits to 8747
           proteins in 456 species: Archae - 0; Bacteria - 449;
           Metazoa - 7438; Fungi - 2099; Plants - 1550; Viruses -
           53; Other Eukaryotes - 8143 (source: NCBI BLink). |
           chr3:823069-824485 REVERSE LENGTH=354
          Length = 354

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/217 (54%), Positives = 143/217 (65%), Gaps = 27/217 (12%)

Query: 12  RLLPYHVVADYEAEEDDRILDSDTTGQVLSRSQQWDNNIAAKIAEFTATFEKQALAFNII 71
           RLLPYHVVADYEAEEDD I DS+TT Q L R QQWDNNIAAK+AEFTATFE Q  AF+ I
Sbjct: 151 RLLPYHVVADYEAEEDDSIFDSNTTSQTLPRCQQWDNNIAAKVAEFTATFEGQVQAFDRI 210

Query: 72  SQKRNLGEFRSEERLMIEQALLQEEKRALM-AGRE--AHEAKLRMAAMYQAEQARAE--- 125
            QKR+ G+ R EERLM+EQ LL +E+ A +   RE  A +A+LRMAA+ QA         
Sbjct: 211 IQKRSDGD-RVEERLMMEQVLLNDERNACIQLDREMKAQDARLRMAALAQAAGQARAEES 269

Query: 126 SHSHAEMMSRAPIRGSALGSQGSGDMMGHDMGEQDQGGHPGDM---MNGWG-----NNAH 177
             SHAEMM+R P+R +A+G+           GEQ +  +P +M   MNGWG     NN+ 
Sbjct: 270 QQSHAEMMARNPLRANAIGNH----------GEQGRNMNPNEMMLLMNGWGNNNNNNNSQ 319

Query: 178 REEKEPSEDFLNDEAENGDTGTQDGWREVGEFDLNAR 214
           +EEKEP EDFLNDE    + G  + WR  G+FDLN R
Sbjct: 320 KEEKEPLEDFLNDEE--NENGEHEKWRRSGDFDLNIR 354