Miyakogusa Predicted Gene

Lj0g3v0154439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0154439.1 Non Chatacterized Hit- tr|C4WYI8|C4WYI8_TRIDB
Putative TdLSC28 protein (SMC6) (Fragment)
OS=Triticum,54.93,5e-16,STRUCTURAL MAINTENANCE OF CHROMOSOMES 6
SMC6,NULL; STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5,
,CUFF.9559.1
         (265 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07660.1 | Symbols: SMC6A | structural maintenance of chromos...   213   9e-56
AT5G61460.1 | Symbols: MIM, ATRAD18, SMC6B | P-loop containing n...   210   6e-55

>AT5G07660.1 | Symbols: SMC6A | structural maintenance of
           chromosomes 6A | chr5:2422839-2429912 FORWARD
           LENGTH=1058
          Length = 1058

 Score =  213 bits (543), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 119/271 (43%), Positives = 175/271 (64%), Gaps = 12/271 (4%)

Query: 7   AAERGLTSSSSVDEIGEAISEIQKKKDEEQVLLKNLQQKKHEAAGKADDLKTQFDKLCES 66
           A+E   + +SSV+E+   I + QK+ +E++ LL+ LQ    EA  KA++LK  ++ L ES
Sbjct: 705 ASETKASPTSSVNELHLEIMKFQKEIEEKESLLEKLQDSLKEAELKANELKASYENLYES 764

Query: 67  TNGXXXXXXXX------------XXXXXXYHYDGVMKNKVLRDIQEAEEHNLVLTKRREE 114
             G                           HY+ +MK+KVL +I++AE     L  +R+E
Sbjct: 765 AKGEIEALEKAEDELKEKEDELHSAETEKNHYEDIMKDKVLPEIKQAETIYKELEMKRQE 824

Query: 115 FVEKASIICCVNELNSLGGCDGDTPEKISAQLEEVKQTLRRESPRYSESIDDLRMLYAKK 174
             +KASIIC  +E+ +LG  DG TP ++SAQ+ ++   L+RE+  YSESIDDLR+++ +K
Sbjct: 825 SNKKASIICPESEIKALGPWDGPTPLQLSAQINKINHRLKRENENYSESIDDLRIMHGEK 884

Query: 175 ERKITKRQQVYKALRQKLDACERALKVRRNKFQTNASCVKRQLSWKFNTHLRRKGISGLI 234
           E+KI K+++ YK+ R+KL  C+ A+  R NK Q N   +KR+L+W+FN HL +KGISG I
Sbjct: 885 EQKIGKKRKTYKSCREKLKVCKDAVDSRWNKLQRNKDLLKRELTWQFNHHLGKKGISGNI 944

Query: 235 RVNYEKETLLIEVQMPQDASNKAVQDTRGLS 265
           RV+YE +TL IEV+MPQDA+N AV+DTRGLS
Sbjct: 945 RVSYEDKTLSIEVKMPQDATNSAVRDTRGLS 975


>AT5G61460.1 | Symbols: MIM, ATRAD18, SMC6B | P-loop containing
           nucleoside triphosphate hydrolases superfamily protein |
           chr5:24714551-24721841 REVERSE LENGTH=1057
          Length = 1057

 Score =  210 bits (535), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 122/271 (45%), Positives = 169/271 (62%), Gaps = 12/271 (4%)

Query: 7   AAERGLTSSSSVDEIGEAISEIQKKKDEEQVLLKNLQQKKHEAAGKADDLKTQFDKLCES 66
           AAE     SSSV+E+   I +  ++ DE++  L+ LQ    EA  KA+ L   F+ + ES
Sbjct: 704 AAEIEALPSSSVNELQREIMKDLEEIDEKEAFLEKLQNCLKEAELKANKLTALFENMRES 763

Query: 67  TNGXXXXXXXX------------XXXXXXYHYDGVMKNKVLRDIQEAEEHNLVLTKRREE 114
             G                           HY+ +MKNKVL DI+ AE +   L  +R+E
Sbjct: 764 AKGEIDAFEEAENELKKIEKDLQSAEAEKIHYENIMKNKVLPDIKNAEANYEELKNKRKE 823

Query: 115 FVEKASIICCVNELNSLGGCDGDTPEKISAQLEEVKQTLRRESPRYSESIDDLRMLYAKK 174
             +KAS IC  +E+ SLG  DG TPE++SAQ+  + Q L RE+ ++SESIDDLRM+Y   
Sbjct: 824 SDQKASEICPESEIESLGPWDGSTPEQLSAQITRMNQRLHRENQQFSESIDDLRMMYESL 883

Query: 175 ERKITKRQQVYKALRQKLDACERALKVRRNKFQTNASCVKRQLSWKFNTHLRRKGISGLI 234
           ERKI K+++ Y+  R+KL AC+ AL  R  KFQ NAS ++RQL+W+FN HL +KGISG I
Sbjct: 884 ERKIAKKRKSYQDHREKLMACKNALDSRWAKFQRNASLLRRQLTWQFNAHLGKKGISGHI 943

Query: 235 RVNYEKETLLIEVQMPQDASNKAVQDTRGLS 265
           +V+YE +TL IEV+MPQDA++  V+DT+GLS
Sbjct: 944 KVSYENKTLSIEVKMPQDATSNVVRDTKGLS 974