Miyakogusa Predicted Gene
- Lj0g3v0154339.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0154339.1 CUFF.9534.1
(518 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 251 7e-67
AT2G03470.1 | Symbols: | ELM2 domain-containing protein | chr2:... 203 3e-52
AT2G03470.2 | Symbols: | ELM2 domain-containing protein | chr2:... 202 3e-52
AT1G13880.1 | Symbols: | ELM2 domain-containing protein | chr1:... 197 1e-50
AT4G11400.1 | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 do... 106 4e-23
AT5G04110.1 | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114... 89 8e-18
AT2G46040.1 | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 do... 87 3e-17
>AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: ELM2
domain-containing protein (TAIR:AT2G03470.1); Has 161
Blast hits to 161 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:9185620-9187213 FORWARD LENGTH=493
Length = 493
Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 191/529 (36%), Positives = 262/529 (49%), Gaps = 64/529 (12%)
Query: 1 MVQKRPFDDGEILEVSFKHPKHGGPYNELVPISDSVFPVDDRHTHMPKT----SEGGFTQ 56
M KRPF+D + E+ KH + YN+ + V P H KT +EG +
Sbjct: 1 MGFKRPFEDEKFHELPLKHSRQL-DYNDKSTQFEEVSP---HHAGFQKTVATVNEGNLCK 56
Query: 57 DSTEGNEKLPRGTGDSETSFPLVGIPAS---SWTTSTITAEDHRLEPPFHLSLFPEYFSP 113
++G E D E+++ G +W T D P H +YF
Sbjct: 57 --SQGGESSEGDMFDEESNYVYPGHDMDDTFTWDTQGCGGRDATYSP--HSG---KYFEL 109
Query: 114 ERPQRTVTRYEDIYSTLLQQSPRKLACVGDNYQADIPAWDFSGPINTSNASNGVSDSDIT 173
+ P R E Y LL Q +K +G +QA+IP W+ S N + V +
Sbjct: 110 DIPPRVFAPVETFYYLLLDQRAKKQVPIGPGHQAEIPEWEGSQTGNIETSGMSVQNHISG 169
Query: 174 TGDGDETEKKLMGTCILPMPQMELSSNDDDEVGKGRTDCRCYDRGSMRCVRQHIAEEREK 233
DG+ KL GT ++PMP + ++ DD VGKGR C C DR S+RCV QHI E RE+
Sbjct: 170 CADGE----KLFGTSVIPMPGLTTVAHIDDIVGKGRKFCVCRDRDSVRCVCQHIKEAREE 225
Query: 234 LIKTFGLEKFIELGFADMGEQVAAQWSAVDEQLFHEVVFNNPPSLDRNFWNYLSIVFPSL 293
L+KTFG E F ELG +MGE+ A +WS D QLFHEVV++NP +L +NFW +L F S
Sbjct: 226 LVKTFGNETFKELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSR 285
Query: 294 TKKEIVSYYFNVFMLRRRAEQNRNDVLSIDSDNDEWQGSDGNDIATR---EEDEDSAAES 350
T+KEIVS+YFNVF+LRRRA QNR +L IDSD+DEW G G TR E++EDSA ES
Sbjct: 286 TQKEIVSFYFNVFVLRRRAIQNRAFILDIDSDDDEWHGCYGGSSGTRYVEEDEEDSAIES 345
Query: 351 PVCHDPT---FTNCHDNDLQDYDEYAADETCGDNRTADFAKGSSINDDSEFGSAETHHSS 407
P+ H T + H+ +D + DE D + G+ + D+ + S
Sbjct: 346 PL-HQGTKKVYPLHHEEGEEDVSHSSNDEDDDDTKEG----GTGLYDEHKMSST------ 394
Query: 408 GSPPLIQPQDQFVWQDPCDEKVKDDSCTSSETGV-AVQEETKGNTENGDHWCGNYNGVSN 466
++ D+F + V+DDSCTS E AV K T G+
Sbjct: 395 -----VEYMDRFSGNNGERLNVEDDSCTSFELARNAVNCAEKDETVPGE----------- 438
Query: 467 GYSQGCVLEHC----DAEVWD-SGFVSCSKNKMDFLPTCNMIEEVFGDG 510
Q L+ C D +VWD S ++ N D PT ++EE+FG+G
Sbjct: 439 ---QQKKLKDCNDPIDTKVWDASRCLNVPTNGKDLQPTRRIMEEIFGNG 484
>AT2G03470.1 | Symbols: | ELM2 domain-containing protein |
chr2:1045694-1047130 REVERSE LENGTH=450
Length = 450
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 133/207 (64%), Gaps = 16/207 (7%)
Query: 124 EDIYSTLLQQSPRKLACVGDNYQADIPAWDFSGPINTSNASNGVSDSDITTGDGDETEKK 183
ED+Y+ L+ Q PRK VG N+QADIP + ++ S A ++ E K
Sbjct: 108 EDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTK-----------EDLEGK 156
Query: 184 LMGTCILPMPQMELSSNDDDEVGKGRTDCRCYDRGSMRCVRQHIAEEREKLIKTFGLEKF 243
LM C++PM +L G+GR +C C D+GS+RCVR+HI E RE L++T G E+F
Sbjct: 157 LMRKCVIPMSDSDLCG-----TGQGRKECLCLDKGSIRCVRRHIIEARESLVETIGYERF 211
Query: 244 IELGFADMGEQVAAQWSAVDEQLFHEVVFNNPPSLDRNFWNYLSIVFPSLTKKEIVSYYF 303
+ELG +MGE+VA+ W+ +E LFH+VV++NP S R+FW L FPS T KE+VSYYF
Sbjct: 212 MELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSRTMKELVSYYF 271
Query: 304 NVFMLRRRAEQNRNDVLSIDSDNDEWQ 330
NVF+LRRR QNR L +DSD+DEWQ
Sbjct: 272 NVFILRRRGIQNRFKALDVDSDDDEWQ 298
>AT2G03470.2 | Symbols: | ELM2 domain-containing protein |
chr2:1045694-1047130 REVERSE LENGTH=449
Length = 449
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 133/207 (64%), Gaps = 16/207 (7%)
Query: 124 EDIYSTLLQQSPRKLACVGDNYQADIPAWDFSGPINTSNASNGVSDSDITTGDGDETEKK 183
ED+Y+ L+ Q PRK VG N+QADIP + ++ S A ++ E K
Sbjct: 107 EDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTK-----------EDLEGK 155
Query: 184 LMGTCILPMPQMELSSNDDDEVGKGRTDCRCYDRGSMRCVRQHIAEEREKLIKTFGLEKF 243
LM C++PM +L G+GR +C C D+GS+RCVR+HI E RE L++T G E+F
Sbjct: 156 LMRKCVIPMSDSDLCG-----TGQGRKECLCLDKGSIRCVRRHIIEARESLVETIGYERF 210
Query: 244 IELGFADMGEQVAAQWSAVDEQLFHEVVFNNPPSLDRNFWNYLSIVFPSLTKKEIVSYYF 303
+ELG +MGE+VA+ W+ +E LFH+VV++NP S R+FW L FPS T KE+VSYYF
Sbjct: 211 MELGLCEMGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSRTMKELVSYYF 270
Query: 304 NVFMLRRRAEQNRNDVLSIDSDNDEWQ 330
NVF+LRRR QNR L +DSD+DEWQ
Sbjct: 271 NVFILRRRGIQNRFKALDVDSDDDEWQ 297
>AT1G13880.1 | Symbols: | ELM2 domain-containing protein |
chr1:4749603-4750967 FORWARD LENGTH=424
Length = 424
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 184/356 (51%), Gaps = 28/356 (7%)
Query: 1 MVQKRPFDDGEILEVSFKHPKHGGPYNELVPISDSVFPVDDRHTHMPKTSEGGFTQDSTE 60
M KR FD ++ E++ K+ + N+L + + V + K G+
Sbjct: 1 MGFKRTFDAEDVQELNVKNGRQISYCNKLAKLDEGV----PYRLSLEKPGVVGYDISDLY 56
Query: 61 GNEKLPRGTGDSETSFPLVGIPASSWTTSTITAEDHRLEPPFHLSLFPEYFSPERPQRTV 120
G + ET+ P SW T+ ++ ED + ++ E + P R V
Sbjct: 57 GYKCEDNVDKGFETNAPF------SWITTGLSEEDSQSGATIQSTISHESPESDIPWRPV 110
Query: 121 -TRYEDIYSTLLQQSPRKLACVGDNYQADIPAWDFSGPINTSNASNGVSDSDITTGDGDE 179
+ ED Y + SPRK +G +YQADIP + S G
Sbjct: 111 CSGEEDGYWCPI--SPRKTVPIGSDYQADIPECVKEEANDQSGQGVGYD----------- 157
Query: 180 TEKKLMGTCILPMPQMELSSNDDDEVGKGRTDCRCYDRGSMRCVRQHIAEEREKLIKTFG 239
E+++ G C++PMP E ++GKGR +C C D+GS+RCV+QHI E RE L T G
Sbjct: 158 -EEQVTGKCVIPMPDCETEVC---KIGKGRKECICLDKGSIRCVQQHIMENREDLFATIG 213
Query: 240 LEKFIELGFADMGEQVAAQWSAVDEQLFHEVVFNNPPSLDRNFWNYLSIVFPSLTKKEIV 299
++ +++G +MGE+VAA+ + +E LFHE+V++NP S+DR+FW +L FPS T KEIV
Sbjct: 214 YDRCLDIGLCEMGEEVAARLTEDEEDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTMKEIV 273
Query: 300 SYYFNVFMLRRRAEQNRNDVLSIDSDNDEWQGSDGNDIATREEDEDSAAESPVCHD 355
SYYFNVF+LRRRA QNR+ L +DSD+DEWQ N E D AE + D
Sbjct: 274 SYYFNVFILRRRAIQNRSKSLDVDSDDDEWQVEYDNTFYGAETPSDDKAEKSLSRD 329
>AT4G11400.1 | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2
domain protein | chr4:6938717-6940539 FORWARD LENGTH=573
Length = 573
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 30/222 (13%)
Query: 135 PRKLACVGDNYQADIPAWDFSGPINTSNASNGVSDSDITTGDGDETEKKLMGTCILPMPQ 194
PR+ VG +QA + W T G +++ K +GT I P
Sbjct: 370 PRRCIKVGHQHQAQVDEW---------------------TESGVDSDSKWLGTRIWPPEN 408
Query: 195 MEL--SSNDDDEVGKGRTD-CRCYDRGSMRCVRQHIAEEREKLIKTFGLEKFIELGFADM 251
E + +D VGKGR D C C G + C R HIAE+R +L + G + F F M
Sbjct: 409 SEALDQTLGNDLVGKGRPDSCSCELSGFVECTRLHIAEKRMELKRELG-DDFFHWRFNQM 467
Query: 252 GEQVAAQWSAVDEQLFHEVVFNNPPSLDRNFWNYLSIVFPSLTKKEIVSYYFNVFMLRRR 311
GE+V +W+ +E+ F +++ +P S FW + FP ++E+VSYYFNVF++ RR
Sbjct: 468 GEEVCLRWTEEEEKRFKDMIIADPQS----FWTNAAKNFPKKKREELVSYYFNVFLINRR 523
Query: 312 AEQNRNDVLSIDSDNDEWQGSDGNDIATREEDEDSAAESPVC 353
QNR SIDSD++ GS G R+ S ++ +C
Sbjct: 524 RYQNRVTPKSIDSDDEGAFGSVGGSFG-RDAVTSSGSDVMIC 564
>AT5G04110.1 | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114112
REVERSE LENGTH=546
Length = 546
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 15/172 (8%)
Query: 141 VGDNYQADIPAWDFSGPINTSNASNGVSDSDITTGDGDETEKKLMGTCILPMPQMELSSN 200
+G +QA+IP W P GD + +GT + P ++ + +
Sbjct: 363 IGPRFQAEIPVW--IAP---------TKKGKFYGSPGDSNTLRWLGTGVWPTYSLKKTVH 411
Query: 201 DDDEVGKGRTD-CRCYDRGSMRCVRQHIAEEREKLIKTFGLEKFIELGFADMGEQVAAQ- 258
+VG+GR+D C C S C+++H E +E L K F F MGE++ +
Sbjct: 412 SK-KVGEGRSDSCSCASPRSTNCIKRHKKEAQELLEKEIN-RAFSTWEFDQMGEEIVLKS 469
Query: 259 WSAVDEQLFHEVVFNNPPSLDRNFWNYLSIVFPSLTKKEIVSYYFNVFMLRR 310
W+A +E+ F +V NP S FW + S FP +KK+++SYY+NVF+++R
Sbjct: 470 WTAKEERRFEALVKKNPLSSSDGFWEFASNAFPQKSKKDLLSYYYNVFLIKR 521
>AT2G46040.1 | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2
domain protein | chr2:18935684-18937807 REVERSE
LENGTH=562
Length = 562
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 27/197 (13%)
Query: 136 RKLACVGDNYQADIPAWDFSGPINTSNASNGVSDSDITTGDGDETEKKLMGTCILPMPQM 195
R A VG +QA +P W TG E++ K +GT I P+ +
Sbjct: 357 RPCALVGSKFQAKVPEW---------------------TGITPESDSKWLGTRIWPLTKE 395
Query: 196 ELSSN---DDDEVGKGRTD-CRCYDRGSMRCVRQHIAEEREKLIKTFGLEKFIELGFADM 251
+ +N + D +GKGR D C C++ GS+ CV+ HI +R+KL G F F M
Sbjct: 396 QTKANLLIERDRIGKGRQDPCGCHNPGSIECVKFHITAKRDKLKLELG-PAFYMWCFDVM 454
Query: 252 GEQVAAQWSAVDEQLFHEVVFNNPPSLDRNFWNYLSIVFPSLTKKEIVSYYFNVFMLRRR 311
GE W+ ++ + + + ++PPSL F + ++ PS ++ +IVSY++NV +L+ R
Sbjct: 455 GECTLQYWTDLELKKI-KSLMSSPPSLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYR 513
Query: 312 AEQNRNDVLSIDSDNDE 328
A Q+R IDSD D+
Sbjct: 514 ASQSRITPHDIDSDTDQ 530