Miyakogusa Predicted Gene

Lj0g3v0152989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0152989.1 Non Chatacterized Hit- tr|I1NZ98|I1NZ98_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,53.93,2e-19,Dynein_light,Dynein light chain, type 1/2; DLC,Dynein
light chain, type 1/2; no description,Dynein l,CUFF.9450.1
         (110 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27360.1 | Symbols:  | Dynein light chain type 1 family prote...   152   5e-38
AT3G16120.1 | Symbols:  | Dynein light chain type 1 family prote...   112   8e-26
AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...   101   8e-23
AT4G15930.1 | Symbols:  | Dynein light chain type 1 family prote...    84   2e-17
AT5G20110.1 | Symbols:  | Dynein light chain type 1 family prote...    83   4e-17
AT1G23220.1 | Symbols:  | Dynein light chain type 1 family prote...    72   8e-14
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    71   1e-13

>AT4G27360.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:13694032-13694517 FORWARD LENGTH=103
          Length = 103

 Score =  152 bits (384), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 85/103 (82%)

Query: 1   MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIV 60
           MLEGKAV+G+TDM QTM+++AL LASKALD FDVTE  +IARFIKKEFDR +G GWQCIV
Sbjct: 1   MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61  GTDFGSFVTHCCGCFIYFCIGSLAILLFRGSADQEAKENHFSA 103
           GT FGSFVTHC GCFI+F +GSL ILLF+GS  + A  +  S+
Sbjct: 61  GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSVGEPAPPDRCSS 103


>AT3G16120.1 | Symbols:  | Dynein light chain type 1 family
          protein | chr3:5465035-5465395 FORWARD LENGTH=93
          Length = 93

 Score =  112 bits (279), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 67/92 (72%)

Query: 1  MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIV 60
          MLEGKA + ETDM   MQ  A+ +AS++LD FDV ++I IA  IKKEFD  +G GWQC+V
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCCGCFIYFCIGSLAILLFRGSA 92
          GT+FG F TH  G FIYF +G+L  L+F+G+ 
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92


>AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
          guanyl-nucleotide exchange factor 11 |
          chr1:19458844-19459235 REVERSE LENGTH=94
          Length = 94

 Score =  101 bits (252), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 65/92 (70%)

Query: 1  MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIV 60
          MLEGKA++ ++DM   MQ  A+  AS+ALD FDV +   IA  IKKEFD  +G GWQC+V
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GTDFGSFVTHCCGCFIYFCIGSLAILLFRGSA 92
          G++FG F TH  G FIYF + +L  L+F+G++
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92


>AT4G15930.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:9036344-9037825 FORWARD LENGTH=123
          Length = 123

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 5   KAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIVGTDF 64
           +AVI   DM   MQ+ A+++A  A + + V +  +IA  IKKEFD+ HG  W CIVG +F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 96

Query: 65  GSFVTHCCGCFIYFCIGSLAILLFR 89
           GS+VTH    F+YF +   A+LLF+
Sbjct: 97  GSYVTHETNHFVYFYLDQKAVLLFK 121


>AT5G20110.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr5:6791542-6793253 REVERSE LENGTH=209
          Length = 209

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 49/78 (62%)

Query: 12  DMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIVGTDFGSFVTHC 71
           DM   MQ +A   A   LD  +   +  +A  +KKEFD+ +GP W CIVG+ FGSFVTH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  CGCFIYFCIGSLAILLFR 89
            GCFIYF +  L +LLF+
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200


>AT1G23220.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr1:8242614-8244136 FORWARD LENGTH=129
          Length = 129

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 11  TDMLQTMQQNALDLASKALDFFD-VTEAIEIARFIKKEFDRMHGPGWQCIVGTDFGSFVT 69
           +DM    Q  A  L+ + L+      +   +A  +KK+FD  +GP W CIVGT FGS+VT
Sbjct: 41  SDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVT 100

Query: 70  HCCGCFIYFCIGSLAILLFRGSAD 93
           H  G F+YF I  + +LLF+ + +
Sbjct: 101 HSTGGFLYFQIDKVYVLLFKTAVE 124


>AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
          guanyl-nucleotide exchange factor 11 |
          chr1:19455766-19459235 REVERSE LENGTH=607
          Length = 607

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 1  MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCI 59
          MLEGKA++ ++DM   MQ  A+  AS+ALD FDV +   IA  IKKEFD  +G GWQC+
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59