Miyakogusa Predicted Gene

Lj0g3v0152759.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0152759.1 CUFF.9438.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...   122   4e-29
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    45   8e-06

>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr5:15895729-15897972
           FORWARD LENGTH=747
          Length = 747

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 82/115 (71%)

Query: 1   MLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSVLALIKALHYYGR 60
           ML  N+KPDG  YN++I  HCR  ++RKAY +Y EMV  GF+ H  +V+AL+KALH  G+
Sbjct: 631 MLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGK 690

Query: 61  YNEMSWVIQNTLRSCNLNESELPKVLNEIDFPKCQINALLDVLAEIAMDGLLLDG 115
            NE++ VI + LRSC L+E+E  KVL EI+  +  ++ +LDVLAE+A DG L +G
Sbjct: 691 VNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNG 745


>AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24123983-24126706 REVERSE
           LENGTH=907
          Length = 907

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 1   MLEGNYKPDGAVYNLLIFDHCRCLNVRKAYNMYMEMVHYGFVPHMFSVLALIKALHYYGR 60
           M E N KP+   YN++I  +C   ++ KA+    EM   G VP  +S   LI  L   G+
Sbjct: 533 MAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ 592

Query: 61  YNEMSWVIQNTLR-SCNLNE 79
            +E    +    + +C LNE
Sbjct: 593 ASEAKVFVDGLHKGNCELNE 612