Miyakogusa Predicted Gene

Lj0g3v0151919.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151919.2 CUFF.9361.2
         (64 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26850.1 | Symbols:  | F-box family protein | chr2:11449369-1...    68   2e-12
AT2G32560.1 | Symbols:  | F-box family protein | chr2:13824820-1...    61   1e-10
AT2G41170.1 | Symbols:  | F-box family protein | chr2:17159310-1...    59   7e-10

>AT2G26850.1 | Symbols:  | F-box family protein |
           chr2:11449369-11450889 REVERSE LENGTH=371
          Length = 371

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 3   RNIGWEKLRRSSVETPPCVRYVSDCLEDLKPGDHIEIQCKLMVETHYDWWYAVIGHLDS 61
           +++ WE++R + V+  P   YVSD L +LKPGDHIEIQ +   E  Y WWY+V+GH++S
Sbjct: 238 KDVTWERIRAAPVDASPHNLYVSDSLNELKPGDHIEIQWRRNKEFPYGWWYSVVGHMES 296


>AT2G32560.1 | Symbols:  | F-box family protein |
           chr2:13824820-13826761 FORWARD LENGTH=371
          Length = 371

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 41/59 (69%)

Query: 3   RNIGWEKLRRSSVETPPCVRYVSDCLEDLKPGDHIEIQCKLMVETHYDWWYAVIGHLDS 61
           + + W+++R + ++  P + +VSD L++LKPGDHIEIQ +   E  Y WWY ++ HL+S
Sbjct: 239 KGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLES 297


>AT2G41170.1 | Symbols:  | F-box family protein |
           chr2:17159310-17160845 REVERSE LENGTH=371
          Length = 371

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 5   IGWEKLRRSSVETPPCVRYVSDCLEDLKPGDHIEIQCKLMVETHYDWWYAVIGHLDS 61
           + W++LR S  +T     +VSDCL  L+PGDH EIQ +   E  Y WW+ ++GHL +
Sbjct: 241 VTWQRLRPSQDDTKSRDLHVSDCLHGLRPGDHFEIQWRRTKEFPYGWWFGIVGHLQN 297