Miyakogusa Predicted Gene

Lj0g3v0151869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151869.1 tr|A9T4N0|A9T4N0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_88027
,37.8,3e-19,EF_HAND_2,EF-HAND 2; SUBFAMILY NOT NAMED,NULL; EF-HAND
CALCIUM-BINDING DOMAIN CONTAINING PROTEIN,NUL,CUFF.9354.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein...   133   5e-32
AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein...    60   4e-10
AT4G38810.2 | Symbols:  | Calcium-binding EF-hand family protein...    50   6e-07

>AT2G44310.1 | Symbols:  | Calcium-binding EF-hand family protein |
           chr2:18309285-18309713 FORWARD LENGTH=142
          Length = 142

 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 102/137 (74%), Gaps = 2/137 (1%)

Query: 1   MSVEILDGATIVNFLEDEEAFDISVCDRFALLDTNNDGLLSYEEMLKELQSLRVLETHYG 60
           M V ++DG+T+ +F++DEE F  SV +RFA LD N DG+LS  E+ K  +S+R+LE+H+G
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  IDVEPNPDELARVYESLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMVL-- 118
           +DV    DEL  +Y+S+F +FD + +GSVDLEEF+ E ++++LA+ADG+G  P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 119 EEDSILKRAVERECNRV 135
           ++D+ LK+A + E +++
Sbjct: 121 DDDNFLKKAADLEASKL 137


>AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein |
           chr1:20366505-20366888 FORWARD LENGTH=127
          Length = 127

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 9/130 (6%)

Query: 5   ILDGATIVNFLEDEEAFDISVCDRFALLDTNNDGLLSYEEMLKELQSLRVLETHYGIDVE 64
           ++   T++ FL D ++F+    D F +LD + +G+LS  E+ + L ++  +E+    +V 
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVES----EVA 60

Query: 65  PNPDELARVYESLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMVLEEDSIL 124
           P  DE   VY ++F +F  +L      + F+    E++ AMA G+G  PV MV+  D ++
Sbjct: 61  PG-DETDNVYNAIFERFGEDLVP----KNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 115

Query: 125 KRAVERECNR 134
            +AV  E  +
Sbjct: 116 MKAVLHESKQ 125


>AT4G38810.2 | Symbols:  | Calcium-binding EF-hand family protein |
           chr4:18115607-18118860 REVERSE LENGTH=375
          Length = 375

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 4   EILDGATIVNFLEDEEAFDISVCDRFALLDTNNDGLLSYEEMLKELQSLRVLETHYGIDV 63
           ++LDG+ IV  +E+E+ FD  V  +F  LD + DG LS  E+   +  +           
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGT 72

Query: 64  EPNPDELARVYESLFIQFDHNLNGSVDLEEFKMETREMMLAMADGMGFLPV 114
            P+ D    +Y  +  +F H     V   EFK    +++L MA G+   P+
Sbjct: 73  SPDSD---HIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI 120