Miyakogusa Predicted Gene

Lj0g3v0151829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151829.1 tr|I1CPV8|I1CPV8_RHIO9 SSU rRNA processing
protein OS=Rhizopus delemar (strain RA 99-880 / ATCC
MYA-,41.73,3e-18,RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED,Ribosomal
RNA-processing protein 7; coiled-coil,NULL; seg,CUFF.9359.1
         (291 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38720.1 | Symbols:  | unknown protein; Has 13419 Blast hits ...   200   9e-52

>AT5G38720.1 | Symbols:  | unknown protein; Has 13419 Blast hits to
           9093 proteins in 698 species: Archae - 38; Bacteria -
           1038; Metazoa - 4949; Fungi - 1086; Plants - 485;
           Viruses - 44; Other Eukaryotes - 5779 (source: NCBI
           BLink). | chr5:15508417-15510472 REVERSE LENGTH=306
          Length = 306

 Score =  200 bits (509), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 118/149 (79%), Gaps = 1/149 (0%)

Query: 144 EVHIISSGDEDCSKGMKKWIMEYHQSRPGLETLQRQIDDFITAHXXXXXXXXXXXXXXXX 203
           +V+ ISSGDEDC++GMKKW+ +Y++ RPGL+ LQ++IDDF+TAH                
Sbjct: 158 DVYQISSGDEDCTRGMKKWVSDYYEGRPGLDELQKRIDDFMTAHEERLEQEKQDKEAKAA 217

Query: 204 DGGWTVVVHHKGRKKTTESESGIAVGSVAQAAVENKMSKKKPKE-VGLDFYRFQKKEAHR 262
           +GGWTVVVHHKGRKKTTESE+G AVGS +QAA+E+K++KKK  E V   FYRFQ+++A R
Sbjct: 218 EGGWTVVVHHKGRKKTTESETGTAVGSFSQAALEDKIAKKKQSEPVAHGFYRFQRRDAQR 277

Query: 263 NELMELQSKFEEDKKHLQQLRASRKFRPY 291
           NEL+ LQSKFEEDKK +QQLRA+R+F+P+
Sbjct: 278 NELLALQSKFEEDKKRIQQLRAARRFKPF 306