Miyakogusa Predicted Gene

Lj0g3v0151579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151579.1 Non Chatacterized Hit- tr|C5YB39|C5YB39_SORBI
Putative uncharacterized protein Sb06g034000
OS=Sorghu,40,3e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; VPRBP
PROTEIN-RELATED,NULL,CUFF.9326.1
         (158 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | c...   147   3e-36

>AT4G31160.1 | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 |
           chr4:15145936-15152939 FORWARD LENGTH=1883
          Length = 1883

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 94/124 (75%), Gaps = 2/124 (1%)

Query: 35  NKLMAKITSNPDNPKPSVLHALASILETHESRYMEESGHSSSSNARAAHLIGRLGSVIRE 94
            KLM  ITS  +NP P++LHAL+ +LE+ ES ++EE+GH S  NAR +H  G+L  +IRE
Sbjct: 55  QKLMEDITSVANNPNPNILHALSQLLESQESLFLEENGHFS--NARGSHNSGKLCILIRE 112

Query: 95  NDDFFELISAKFLLETRYSTAVQAAAARLILCCSLTWIYPHVFEESAVENITNWVKDDNL 154
           ND+FFELIS+ FL E  YSTAV+AA+ARL++ CSLTW+YPHVF+++  EN  NWV ++ +
Sbjct: 113 NDEFFELISSTFLSENSYSTAVKAASARLLMNCSLTWMYPHVFDDAVTENFKNWVMEEAV 172

Query: 155 IFSG 158
            F G
Sbjct: 173 KFPG 176