Miyakogusa Predicted Gene

Lj0g3v0151489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0151489.1 tr|B9GVV8|B9GVV8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_554914 PE=4
SV=1,53.16,0.00000000007,Tub,Tubby, C-terminal; no description,Tubby,
C-terminal; seg,NULL; Tubby C-terminal domain-like,Tubb,CUFF.9317.1
         (342 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16070.2 | Symbols: AtTLP8, TLP8 | tubby like protein 8 | chr...   315   4e-86
AT1G16070.1 | Symbols: AtTLP8, TLP8 | tubby like protein 8 | chr...   314   5e-86

>AT1G16070.2 | Symbols: AtTLP8, TLP8 | tubby like protein 8 |
           chr1:5511899-5513779 REVERSE LENGTH=398
          Length = 398

 Score =  315 bits (806), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/270 (57%), Positives = 197/270 (72%), Gaps = 15/270 (5%)

Query: 72  VLKPSSLQFCMKMNDPLD-------------SHHSSTTSLNIWDFSDSEAAPASSWSTLP 118
            LK SSLQ CM+ N  +D             S HSS  SL +W+FSDSEAAPASSWSTLP
Sbjct: 82  ALKQSSLQACMQKNSEVDKSSFGMKTWTSVDSEHSS--SLKVWEFSDSEAAPASSWSTLP 139

Query: 119 NKSLICRPLPVDIGRCTCVIVKEATPQGLSGGTFFSLYTYEGQGRQNRKLAVALHKRRNG 178
           N++L+C+ LP+D+GRCTC+IVKE +P+GLS G+ +SLYT+EG+GR++RKLAVA H RRNG
Sbjct: 140 NRALLCKTLPLDVGRCTCLIVKEQSPEGLSHGSVYSLYTHEGRGRKDRKLAVAYHSRRNG 199

Query: 179 RSHFTVAQNLKGLMSNSDESFLGTVTANLMGSKYCIWDQGHRHRSHSKQPKLPLSVVRYI 238
           +S F VAQN+KGL+ +SDES++G++TANL+GSKY IWD+G R  S  K  K  LSVV + 
Sbjct: 200 KSIFRVAQNVKGLLCSSDESYVGSMTANLLGSKYYIWDKGVRVGSVGKMVKPLLSVVIFT 259

Query: 239 PTIATCTGSHRSMRAYIPKHQSMSLKNTTQAQHIKGLPMNWEGKLDKVHQLFTRVPLYNK 298
           PTI T TGS+R MR  +PK Q M   N  Q Q    LP++W    +K+ +L +R+P YNK
Sbjct: 260 PTITTWTGSYRRMRTLLPKQQPMQKNNNKQVQQASKLPLDWLENKEKIQKLCSRIPHYNK 319

Query: 299 ISKQLELDYRDKGRPELRIQRSAKNFQLTL 328
           ISKQ ELD+RD+GR  LRIQ S KNFQLTL
Sbjct: 320 ISKQHELDFRDRGRTGLRIQSSVKNFQLTL 349


>AT1G16070.1 | Symbols: AtTLP8, TLP8 | tubby like protein 8 |
           chr1:5511899-5513779 REVERSE LENGTH=397
          Length = 397

 Score =  314 bits (805), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 156/270 (57%), Positives = 197/270 (72%), Gaps = 15/270 (5%)

Query: 72  VLKPSSLQFCMKMNDPLD-------------SHHSSTTSLNIWDFSDSEAAPASSWSTLP 118
            LK SSLQ CM+ N  +D             S HSS  SL +W+FSDSEAAPASSWSTLP
Sbjct: 82  ALKQSSLQACMQKNSEVDKSSFGMKTWTSVDSEHSS--SLKVWEFSDSEAAPASSWSTLP 139

Query: 119 NKSLICRPLPVDIGRCTCVIVKEATPQGLSGGTFFSLYTYEGQGRQNRKLAVALHKRRNG 178
           N++L+C+ LP+D+GRCTC+IVKE +P+GLS G+ +SLYT+EG+GR++RKLAVA H RRNG
Sbjct: 140 NRALLCKTLPLDVGRCTCLIVKEQSPEGLSHGSVYSLYTHEGRGRKDRKLAVAYHSRRNG 199

Query: 179 RSHFTVAQNLKGLMSNSDESFLGTVTANLMGSKYCIWDQGHRHRSHSKQPKLPLSVVRYI 238
           +S F VAQN+KGL+ +SDES++G++TANL+GSKY IWD+G R  S  K  K  LSVV + 
Sbjct: 200 KSIFRVAQNVKGLLCSSDESYVGSMTANLLGSKYYIWDKGVRVGSVGKMVKPLLSVVIFT 259

Query: 239 PTIATCTGSHRSMRAYIPKHQSMSLKNTTQAQHIKGLPMNWEGKLDKVHQLFTRVPLYNK 298
           PTI T TGS+R MR  +PK Q M   N  Q Q    LP++W    +K+ +L +R+P YNK
Sbjct: 260 PTITTWTGSYRRMRTLLPKQQPMQKNNNKQVQQASKLPLDWLENKEKIQKLCSRIPHYNK 319

Query: 299 ISKQLELDYRDKGRPELRIQRSAKNFQLTL 328
           ISKQ ELD+RD+GR  LRIQ S KNFQLTL
Sbjct: 320 ISKQHELDFRDRGRTGLRIQSSVKNFQLTL 349