Miyakogusa Predicted Gene

Lj0g3v0150479.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0150479.2 tr|B9HKE2|B9HKE2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_766427 PE=4 SV=1,46.67,2e-18,Ring
finger,Zinc finger, RING-type; zf-C3HC4,Zinc finger, C3HC4 RING-type;
coiled-coil,NULL; no desc,CUFF.9242.2
         (468 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 | ch...   178   8e-45
AT1G06770.1 | Symbols: DRIP1 | DREB2A-interacting protein 1 | ch...   168   6e-42
AT3G23060.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    96   4e-20

>AT2G30580.1 | Symbols: DRIP2 | DREB2A-interacting protein 2 |
           chr2:13026444-13030363 FORWARD LENGTH=420
          Length = 420

 Score =  178 bits (451), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 97/125 (77%)

Query: 25  ACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLRPD 84
           ACM CPLC  L ++ATTIS CLHTFCRKCIYEK++++E+E CPVC+IDLG  P+EKLRPD
Sbjct: 16  ACMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDIDLGGTPLEKLRPD 75

Query: 85  HNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKSIK 144
           H LQD+RA +FP +R+K    EVV SIS P K+KERS+SS VVS P+VS   G TGK  K
Sbjct: 76  HILQDLRAKLFPLKRKKERAPEVVSSISLPAKRKERSISSLVVSTPRVSAQAGTTGKRTK 135

Query: 145 TGTRK 149
             TRK
Sbjct: 136 AATRK 140


>AT1G06770.1 | Symbols: DRIP1 | DREB2A-interacting protein 1 |
           chr1:2079222-2081707 REVERSE LENGTH=421
          Length = 421

 Score =  168 bits (426), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 96/127 (75%), Gaps = 3/127 (2%)

Query: 23  LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
           + AC+ C +C N+ ++ATTIS CLHTFCRKCIYEK++++E+E CPVCNIDLG  P+EKLR
Sbjct: 10  MRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLGSTPLEKLR 69

Query: 83  PDHNLQDIRAIVFPFERRKIEVQEVVPSISSPGKKKERSLSSFVVSAPKVSTDTGLTGKS 142
           PDHNLQD+RA +F  +RRK++   +V   S PGK+KERS+SS VVS P VS   G T + 
Sbjct: 70  PDHNLQDLRAKIFALKRRKVKAPGIV---SLPGKRKERSISSLVVSTPMVSAQAGTTRRR 126

Query: 143 IKTGTRK 149
            K  TRK
Sbjct: 127 TKAPTRK 133


>AT3G23060.1 | Symbols:  | RING/U-box superfamily protein |
          chr3:8200868-8203116 FORWARD LENGTH=480
          Length = 480

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 52/73 (71%)

Query: 23 LEACMKCPLCRNLFKEATTISLCLHTFCRKCIYEKLSDEEMEFCPVCNIDLGCLPMEKLR 82
          ++ C+ CP+C N FK+ATTIS CLHTFCR CI  K  +E +  CPVCN++LG  P+EKLR
Sbjct: 10 VKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPLEKLR 69

Query: 83 PDHNLQDIRAIVF 95
           D   QD++  ++
Sbjct: 70 SDCTWQDLKLKIY 82