Miyakogusa Predicted Gene

Lj0g3v0150239.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0150239.1 Non Chatacterized Hit- tr|F0IAR1|F0IAR1_STRSA
Putative uncharacterized protein OS=Streptococcus
sang,29.67,0.36,DUF4370,Protein of unknown function
DUF4370,CUFF.9233.1
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47420.1 | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:1...   274   2e-74

>AT1G47420.1 | Symbols: SDH5 | succinate dehydrogenase 5 |
           chr1:17395774-17397176 REVERSE LENGTH=257
          Length = 257

 Score =  274 bits (701), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 122/177 (68%), Positives = 157/177 (88%)

Query: 1   MGLGSMRFYSQDVSHMPDIKDSDLYNAFKDLMAENWSDLSDSLVNDVKSALSKSTDDKTG 60
           MG+G +R +S+DVSHMP+++DSD+ NAFKDLMA +W++L  ++V D K+A+SK+TDDK G
Sbjct: 81  MGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAG 140

Query: 61  KEAVENMFRAAQAVEEFGGMLTSLKMEIDDTVGMSGENIKPLPDHMANALRVIFDRYTTY 120
           +EA++N+FRAA+AVEEFGG+LTS+KMEIDD++GMSGE +KPLP+ + +ALR  + RY  Y
Sbjct: 141 QEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEY 200

Query: 121 LNSFGPEETYLQKKVETELGSKMIHLKMRCSGLGSEWGKVTVLGTSGLAGSYVDQRA 177
           L+SF PEE YL+KKVE ELG+KMIHLKMRCSGLGSEWGKVTVLGTSGL+GSYV+QRA
Sbjct: 201 LDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257