Miyakogusa Predicted Gene

Lj0g3v0149189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0149189.1 Non Chatacterized Hit- tr|D6WB97|D6WB97_TRICA
Putative uncharacterized protein OS=Tribolium castaneu,46.73,3e-19,no
description,Peptidyl-tRNA hydrolase II domain; PTH2,Peptidyl-tRNA
hydrolase, PTH2; UNKNOWN PROTEI,CUFF.9140.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10700.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) fami...   214   3e-56

>AT5G10700.1 | Symbols:  | Peptidyl-tRNA hydrolase II (PTH2) family
           protein | chr5:3378053-3378867 REVERSE LENGTH=200
          Length = 200

 Score =  214 bits (545), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/184 (59%), Positives = 128/184 (69%), Gaps = 18/184 (9%)

Query: 9   PSIRFFTPSSSYLSSRVRVTLAHFHAASVSYRASGLTSSSMSQPADSDTLSTPIEAPSKP 68
           P IRF+  +         +  AHF       R     S SMSQ   +  +   ++A S  
Sbjct: 24  PRIRFYHST---------IRFAHF-------RRFTTASPSMSQ--QTGEIDAVVDASSAE 65

Query: 69  ENADVLVQYVVLRRDLIDTWPLGSVVTQGCHASVSAIWSSKDDPLTVDYCSPDKIDSMHK 128
           +  DV+VQYVVLRRDLID+WPLGSVVTQGCHASV+AIWS KDDP+T+ YC P  IDSMHK
Sbjct: 66  KPDDVVVQYVVLRRDLIDSWPLGSVVTQGCHASVAAIWSFKDDPVTLQYCDPQHIDSMHK 125

Query: 129 VTLEVKGEPQIKNLSEKLTSGGIIHKLWIEQPENFPTCLATKPYPKSVVSPYFKKLKLCN 188
           VTLEVKGE Q+ NLSEKL  GGI HKLW+EQPEN PTC+ATKPYPKS VS +FKKLKLC 
Sbjct: 126 VTLEVKGETQMMNLSEKLKLGGISHKLWMEQPENIPTCIATKPYPKSQVSSFFKKLKLCK 185

Query: 189 ITME 192
            T+ 
Sbjct: 186 NTIH 189