Miyakogusa Predicted Gene

Lj0g3v0149169.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0149169.1 Non Chatacterized Hit- tr|D8RKZ1|D8RKZ1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,43,4e-18,Tim17,Mitochondrial inner membrane translocase subunit
Tim17/Tim22/Tim23/peroxisomal protein PMP24; ,CUFF.9146.1
         (146 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28900.1 | Symbols: OEP16, ATOEP16-L, ATOEP16-1, OEP16-1 | ou...   149   5e-37
AT4G16160.1 | Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial impo...    58   3e-09
AT4G16160.2 | Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial impo...    57   4e-09

>AT2G28900.1 | Symbols: OEP16, ATOEP16-L, ATOEP16-1, OEP16-1 | outer
           plastid envelope protein 16-1 | chr2:12414423-12415459
           REVERSE LENGTH=148
          Length = 148

 Score =  149 bits (377), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 84/143 (58%)

Query: 1   MPLXXXXXXXXXPKVDVAIDMGNPFLNLTVDGFLKIGXXXXXXXXXEDTYHIIKKGSISS 60
           MP          PK+ VA+DMGNPFLNLTVD FLKIG         EDTY  I KGS+S 
Sbjct: 1   MPSSTFSGTVSTPKLSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSK 60

Query: 61  NDFQKTLKKMCKEGAYWGTVAGLYVGMEYGVERIRGRRDWKNAMLGGAVTGALVSAASGD 120
           +  +  LKK+CKEG YWG   G+Y+G EYG+ERIRG RDWKNAML GA TGA++SA    
Sbjct: 61  STLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKK 120

Query: 121 KSDKXXXXXXXXXXXXXXXEFIN 143
             D                +F+N
Sbjct: 121 GKDTIVIDAILGGALATASQFVN 143


>AT4G16160.1 | Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial import
           inner membrane translocase subunit Tim17/Tim22/Tim23
           family protein | chr4:9157545-9158738 FORWARD LENGTH=176
          Length = 176

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 25/130 (19%)

Query: 19  IDMGNPFLNLTVDGFLKIGXXXXXXXXXEDTYHIIKKGSISSN----------------- 61
            D+G+P LN   D F+K            + Y  +  G  S+N                 
Sbjct: 22  FDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGFDSNNVGPPSEITGNKKHRFPN 81

Query: 62  ---DFQKTL----KKMCKEGAYWGTVAGLYVGMEYGVERIR-GRRDWKNAMLGGAVTGAL 113
              +  K+L    K   KE   WG  AGLY G+ YG+  +R G  DW+N+ + GA+TGA 
Sbjct: 82  LRGESSKSLDALVKNTGKESLQWGLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTGAA 141

Query: 114 VSAASGDKSD 123
           ++  + +++ 
Sbjct: 142 MAMTTSERTS 151


>AT4G16160.2 | Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial import
           inner membrane translocase subunit Tim17/Tim22/Tim23
           family protein | chr4:9157545-9158738 FORWARD LENGTH=178
          Length = 178

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 27/132 (20%)

Query: 19  IDMGNPFLNLTVDGFLKIGXXXXXXXXXEDTYHIIKKGS--------------------- 57
            D+G+P LN   D F+K            + Y  +  G+                     
Sbjct: 22  FDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGAGFDSNNVGPPSEITGNKKHRF 81

Query: 58  -----ISSNDFQKTLKKMCKEGAYWGTVAGLYVGMEYGVERIR-GRRDWKNAMLGGAVTG 111
                 SS      +K   KE   WG  AGLY G+ YG+  +R G  DW+N+ + GA+TG
Sbjct: 82  PNLRGESSKSLDALVKNTGKESLQWGLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTG 141

Query: 112 ALVSAASGDKSD 123
           A ++  + +++ 
Sbjct: 142 AAMAMTTSERTS 153