Miyakogusa Predicted Gene

Lj0g3v0149049.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0149049.2 Non Chatacterized Hit- tr|I1J6E0|I1J6E0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,85.89,0,SNF2_N,SNF2-related; P-loop containing nucleoside
triphosphate hydrolases,NULL; SUBFAMILY NOT NAMED,,CUFF.9126.2
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44980.2 | Symbols:  | SNF2 domain-containing protein / helic...   238   1e-63
AT2G44980.1 | Symbols:  | SNF2 domain-containing protein / helic...   234   1e-62
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c...   107   3e-24
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c...   107   3e-24
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |...   105   2e-23
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |...   105   2e-23
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |...   105   2e-23
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21...    96   8e-21
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21...    96   8e-21
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re...    96   1e-20
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD...    92   2e-19
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr...    87   5e-18
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544...    87   7e-18
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:...    87   7e-18
AT5G19310.1 | Symbols:  | Homeotic gene regulator | chr5:6498906...    87   7e-18
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi...    82   2e-16
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat...    78   2e-15
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...    78   2e-15
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...    78   2e-15
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ...    78   3e-15
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat...    78   3e-15
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75...    67   7e-12
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi...    66   1e-11
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129...    62   2e-10
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25...    62   2e-10
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ...    58   3e-09
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac...    57   4e-09
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ...    56   1e-08
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ...    55   2e-08
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW...    54   3e-08
AT1G50410.1 | Symbols:  | SNF2 domain-containing protein / helic...    54   4e-08
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ...    54   7e-08
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ...    53   8e-08
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re...    53   1e-07
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re...    53   1e-07
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6...    52   3e-07
AT3G20010.1 | Symbols:  | SNF2 domain-containing protein / helic...    50   9e-07
AT5G05130.1 | Symbols:  | DNA/RNA helicase protein | chr5:151217...    49   2e-06
AT1G11100.2 | Symbols:  | SNF2 domain-containing protein / helic...    49   2e-06
AT1G11100.1 | Symbols:  | SNF2 domain-containing protein / helic...    49   2e-06

>AT2G44980.2 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein | chr2:18552343-18556669
           REVERSE LENGTH=877
          Length = 877

 Score =  238 bits (607), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 134/162 (82%)

Query: 2   AVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLT 61
           +VL+NVL +++++PRRLL+TGTPIQNNL+ELWALM+FCMP VFGTLDQFLS FK+  D  
Sbjct: 199 SVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGL 258

Query: 62  SVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYV 121
           S  D    K+  + L+ +LGAFMLRRTKS  +E GNLVLPPLTE TV VPLVSLQKK+Y 
Sbjct: 259 SGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIYT 318

Query: 122 SILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFPG 163
           SILRKELP LL LSSG SNH SL NIVIQLRKACSHPYLFPG
Sbjct: 319 SILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPG 360


>AT2G44980.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein | chr2:18552440-18556669
           REVERSE LENGTH=851
          Length = 851

 Score =  234 bits (598), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 134/162 (82%), Gaps = 3/162 (1%)

Query: 2   AVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLT 61
           +VL+NVL +++++PRRLL+TGTPIQNNL+ELWALM+FCMP VFGTLDQFLS FK+  D  
Sbjct: 193 SVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGL 252

Query: 62  SVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYV 121
            V +    K+  + L+ +LGAFMLRRTKS  +E GNLVLPPLTE TV VPLVSLQKK+Y 
Sbjct: 253 DVSND---KETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIYT 309

Query: 122 SILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFPG 163
           SILRKELP LL LSSG SNH SL NIVIQLRKACSHPYLFPG
Sbjct: 310 SILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPG 351


>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
           chr5:6196190-6202058 REVERSE LENGTH=1072
          Length = 1072

 Score =  107 bits (268), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 15/147 (10%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQIL 76
           RLL+TGTP+QNNL ELWAL+ F +P VF + + F   F+    ++  +D  +V   +Q L
Sbjct: 346 RLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQ----ISGENDQQEV---VQQL 398

Query: 77  RSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSS 136
             VL  F+LRR KS  +E G   LPP  ET + V +  +QK+ Y ++L+K+    L + +
Sbjct: 399 HKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQYYKALLQKD----LEVVN 450

Query: 137 GTSNHQSLHNIVIQLRKACSHPYLFPG 163
           G    + L NI +QLRK C+HPYLF G
Sbjct: 451 GGGERKRLLNIAMQLRKCCNHPYLFQG 477


>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
           chr5:6196190-6202058 REVERSE LENGTH=1069
          Length = 1069

 Score =  107 bits (268), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 15/147 (10%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQIL 76
           RLL+TGTP+QNNL ELWAL+ F +P VF + + F   F+    ++  +D  +V   +Q L
Sbjct: 346 RLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQ----ISGENDQQEV---VQQL 398

Query: 77  RSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSS 136
             VL  F+LRR KS  +E G   LPP  ET + V +  +QK+ Y ++L+K+    L + +
Sbjct: 399 HKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQYYKALLQKD----LEVVN 450

Query: 137 GTSNHQSLHNIVIQLRKACSHPYLFPG 163
           G    + L NI +QLRK C+HPYLF G
Sbjct: 451 GGGERKRLLNIAMQLRKCCNHPYLFQG 477


>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1056
          Length = 1056

 Score =  105 bits (261), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 15/147 (10%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQIL 76
           RLL+TGTP+QNNL ELWAL+ F +P +F + + F   F+    ++  +D  +V   +Q L
Sbjct: 341 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ----ISGENDQQEV---VQQL 393

Query: 77  RSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSS 136
             VL  F+LRR KS  +E G   LPP  ET + V +  +QK+ Y ++L+K+L  +    +
Sbjct: 394 HKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQYYKALLQKDLEAV----N 445

Query: 137 GTSNHQSLHNIVIQLRKACSHPYLFPG 163
                + L NI +QLRK C+HPYLF G
Sbjct: 446 AGGERKRLLNIAMQLRKCCNHPYLFQG 472


>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1057
          Length = 1057

 Score =  105 bits (261), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 15/147 (10%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQIL 76
           RLL+TGTP+QNNL ELWAL+ F +P +F + + F   F+    ++  +D  +V   +Q L
Sbjct: 341 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ----ISGENDQQEV---VQQL 393

Query: 77  RSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSS 136
             VL  F+LRR KS  +E G   LPP  ET + V +  +QK+ Y ++L+K+L  +    +
Sbjct: 394 HKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQYYKALLQKDLEAV----N 445

Query: 137 GTSNHQSLHNIVIQLRKACSHPYLFPG 163
                + L NI +QLRK C+HPYLF G
Sbjct: 446 AGGERKRLLNIAMQLRKCCNHPYLFQG 472


>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
           chr3:1941066-1946700 FORWARD LENGTH=1055
          Length = 1055

 Score =  105 bits (261), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 15/147 (10%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQIL 76
           RLL+TGTP+QNNL ELWAL+ F +P +F + + F   F+    ++  +D  +V   +Q L
Sbjct: 341 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ----ISGENDQQEV---VQQL 393

Query: 77  RSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSS 136
             VL  F+LRR KS  +E G   LPP  ET + V +  +QK+ Y ++L+K+L  +    +
Sbjct: 394 HKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQYYKALLQKDLEAV----N 445

Query: 137 GTSNHQSLHNIVIQLRKACSHPYLFPG 163
                + L NI +QLRK C+HPYLF G
Sbjct: 446 AGGERKRLLNIAMQLRKCCNHPYLFQG 472


>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
           chr3:21199612-21207635 FORWARD LENGTH=1507
          Length = 1507

 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 8/149 (5%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQIL 76
           RLL+TGTPIQNN++ELWAL++F MP +F   DQF   F    +  + H     + +L  L
Sbjct: 744 RLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRL 803

Query: 77  RSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRK-ELPKLLSLS 135
            ++L  FMLRR K   +      L   TE TV   L S Q+  Y +I  K  L +L   +
Sbjct: 804 HAILKPFMLRRVKKDVVS----ELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSN 859

Query: 136 SGTSNHQ---SLHNIVIQLRKACSHPYLF 161
            G    +   +L NIVIQLRK C+HP LF
Sbjct: 860 RGQFTDKKVLNLMNIVIQLRKVCNHPELF 888


>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
           chr3:21199612-21207635 FORWARD LENGTH=1540
          Length = 1540

 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 8/149 (5%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQIL 76
           RLL+TGTPIQNN++ELWAL++F MP +F   DQF   F    +  + H     + +L  L
Sbjct: 777 RLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRL 836

Query: 77  RSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRK-ELPKLLSLS 135
            ++L  FMLRR K   +      L   TE TV   L S Q+  Y +I  K  L +L   +
Sbjct: 837 HAILKPFMLRRVKKDVVS----ELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSN 892

Query: 136 SGTSNHQ---SLHNIVIQLRKACSHPYLF 161
            G    +   +L NIVIQLRK C+HP LF
Sbjct: 893 RGQFTDKKVLNLMNIVIQLRKVCNHPELF 921


>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
           remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
           FORWARD LENGTH=1384
          Length = 1384

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 18/160 (11%)

Query: 4   LFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSV 63
           LF+ L  +Y    R+L+TGTP+QNNL EL+ LM+F     FG+L++F   FKDI+     
Sbjct: 434 LFSSLT-QYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ---- 488

Query: 64  HDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSI 123
                 ++++  L  +L   +LRR K   M+     +PP  E  + V L SLQK+ Y +I
Sbjct: 489 ------EEQISRLHKMLAPHLLRRVKKDVMK----DMPPKKELILRVDLSSLQKEYYKAI 538

Query: 124 LRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFPG 163
             +   ++L+   G     SL+NI+++LRK C HPY+  G
Sbjct: 539 FTRNY-QVLTKKGGA--QISLNNIMMELRKVCCHPYMLEG 575


>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
           | chromatin remodeling 1 | chr5:26649050-26652869
           FORWARD LENGTH=764
          Length = 764

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 12/158 (7%)

Query: 14  MPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTF----KDISDLTSVHDSPKV 69
           M  +LL+TGTP+QNNLSELW+L+ F +P +F + D+F S F    K+ ++ T   +  + 
Sbjct: 354 MDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRR 413

Query: 70  KDRLQILRSVLGAFMLRRTKSKHMECG-NLVLPPLTETTVFVPLVSLQKKVYVSILRKEL 128
              +  L  +L  F+LRR     M+C   L LP   E  ++  +   QKK    ++   L
Sbjct: 414 AQVVSKLHGILRPFILRR-----MKCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTL 468

Query: 129 PKLLSLSS--GTSNHQSLHNIVIQLRKACSHPYLFPGQ 164
              L  ++  G      L+N+VIQLRK C+HP L  GQ
Sbjct: 469 EAHLGENAIRGQGWKGKLNNLVIQLRKNCNHPDLLQGQ 506


>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
           chr5:18083659-18092162 REVERSE LENGTH=2223
          Length = 2223

 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 16/160 (10%)

Query: 4   LFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSV 63
           LF++L + +    R+L+TGTP+QNN+ E++ L+ F  PS F +L  F   F    DLTS 
Sbjct: 841 LFSLL-NTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEERFH---DLTSA 896

Query: 64  HDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSI 123
                  ++++ L+ ++   MLRR K   M+     +PP TE  V V L S+Q + Y ++
Sbjct: 897 -------EKVEELKKLVAPHMLRRLKKDAMQN----IPPKTERMVPVELTSIQAEYYRAM 945

Query: 124 LRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFPG 163
           L K    L ++  G +  QS+ NIV+QLRK C+HPYL PG
Sbjct: 946 LTKNYQILRNIGKGVA-QQSMLNIVMQLRKVCNHPYLIPG 984


>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
           chr2:5544601-5555543 REVERSE LENGTH=1724
          Length = 1724

 Score = 86.7 bits (213), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 24/150 (16%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDI-----SDLTSVHDSPKVKD 71
           +LL+TGTP+QN++ ELWAL++F  P  F   D+F+  +K++     S+L ++H    ++ 
Sbjct: 784 KLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKNLSSFNESELANLH----LEL 839

Query: 72  RLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKL 131
           R  ILR V+          K +E     LPP  E  + V +  LQK+ Y  IL +    L
Sbjct: 840 RPHILRRVI----------KDVEKS---LPPKIERILRVEMSPLQKQYYKWILERNFHDL 886

Query: 132 LSLSSGTSNHQSLHNIVIQLRKACSHPYLF 161
                G  N  SL NIV++L+K C+HP+LF
Sbjct: 887 NKGVRG--NQVSLLNIVVELKKCCNHPFLF 914


>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
           chr3:1802435-1807284 REVERSE LENGTH=1102
          Length = 1102

 Score = 86.7 bits (213), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 91/168 (54%), Gaps = 17/168 (10%)

Query: 2   AVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFK-DISDL 60
           + L   L   Y + RRLL+TGTPIQN+L ELW+L+ F +P +F ++  F   F    +D 
Sbjct: 541 SALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADR 600

Query: 61  TSVHDSPKVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQK 117
            +V  S   ++ L I   L  V+  F+LRR K +  +     LP  T+  +   + + QK
Sbjct: 601 GNV--SLTDEEELLIIHRLHHVIRPFILRRKKDEVEK----FLPGKTQVILKCDMSAWQK 654

Query: 118 KVYVSILRKELPKL--LSLSSGTSNHQSLHNIVIQLRKACSHPYLFPG 163
             Y     K++  +  + L +G+   +SL N+ +QLRK C+HPYLF G
Sbjct: 655 VYY-----KQVTDMGRVGLQTGSGKSKSLQNLTMQLRKCCNHPYLFVG 697


>AT5G19310.1 | Symbols:  | Homeotic gene regulator |
           chr5:6498906-6503432 FORWARD LENGTH=1064
          Length = 1064

 Score = 86.7 bits (213), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 17/166 (10%)

Query: 4   LFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD-ISDLTS 62
           L   L   Y + RRLL+TGTPIQN+L ELW+L+ F +P +F ++  F   F    ++  S
Sbjct: 525 LAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGS 584

Query: 63  VHDSPKVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 119
              S   ++ L I   L  V+  F+LRR KS+  +     LP  T+  +   + + QK  
Sbjct: 585 A--SLTDEEELLIINRLHHVIRPFLLRRKKSEVEK----FLPGKTQVILKCDMSAWQKLY 638

Query: 120 YVSILRKELPKL--LSLSSGTSNHQSLHNIVIQLRKACSHPYLFPG 163
           Y     K++  +  + L SG    +SL N+ +QLRK C+HPYLF G
Sbjct: 639 Y-----KQVTDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLFVG 679


>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr3:4065636-4073992 FORWARD LENGTH=2055
          Length = 2055

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 13/152 (8%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTF-KDISDLTSVHD--SPKVKDR 72
           RR+L+TGTP+QN+L ELW+LM+F MP VF +  +F   F   I+ +    +  + +V DR
Sbjct: 687 RRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEKINKEVIDR 746

Query: 73  LQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLL 132
           L    +VL  F+LRR K    +     LP   E  +F  L   Q+ +Y   +     +  
Sbjct: 747 LH---NVLRPFLLRRLKRDVEK----QLPSKHEHVIFCRLSKRQRNLYEDFIASTETQ-A 798

Query: 133 SLSSGTSNHQSLHNIVIQLRKACSHPYLFPGQ 164
           +L+SG+     + +I++QLRK C+HP LF G+
Sbjct: 799 TLTSGS--FFGMISIIMQLRKVCNHPDLFEGR 828


>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
           | chr4:15431528-15438443 FORWARD LENGTH=1161
          Length = 1161

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 38/153 (24%)

Query: 18  LLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILR 77
           +L+TGTP+QNNL+EL+ALM+F     FG+L++    F+DI+           ++++  L 
Sbjct: 340 VLLTGTPLQNNLNELFALMHFLDADKFGSLEK----FQDINK----------EEQISRLH 385

Query: 78  SVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSG 137
            +L   +LRR K   ++     +PP  E  + V + S QK+VY +++             
Sbjct: 386 QMLAPHLLRRLKKDVLKDK---VPPKKELILRVDMSSQQKEVYKAVI------------- 429

Query: 138 TSNHQSL--------HNIVIQLRKACSHPYLFP 162
           T+N+Q L         N++++LR+ CSHPYL P
Sbjct: 430 TNNYQVLTKKRDAKISNVLMKLRQVCSHPYLLP 462


>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3543
          Length = 3543

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 17/156 (10%)

Query: 12   YIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLS----TFKDISDLTSVHDSP 67
            Y+   RLL+TGTP+QNNL ELWAL+ F +P++F + + F       F+   + ++     
Sbjct: 903  YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALL 962

Query: 68   KVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSIL 124
              ++ L I   L  VL  F+LRR K K        LP   E      L+  +   Y  +L
Sbjct: 963  SEEENLLIINRLHQVLRPFVLRRLKHKVEN----ELPEKIER-----LIRCEASAYQKLL 1013

Query: 125  RKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYL 160
             K +   L  S G +  +++HN V++LR  C+HPYL
Sbjct: 1014 MKRVEDNLG-SIGNAKSRAVHNSVMELRNICNHPYL 1048


>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3574
          Length = 3574

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 17/156 (10%)

Query: 12   YIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLS----TFKDISDLTSVHDSP 67
            Y+   RLL+TGTP+QNNL ELWAL+ F +P++F + + F       F+   + ++     
Sbjct: 903  YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALL 962

Query: 68   KVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSIL 124
              ++ L I   L  VL  F+LRR K K        LP   E      L+  +   Y  +L
Sbjct: 963  SEEENLLIINRLHQVLRPFVLRRLKHKVEN----ELPEKIER-----LIRCEASAYQKLL 1013

Query: 125  RKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYL 160
             K +   L  S G +  +++HN V++LR  C+HPYL
Sbjct: 1014 MKRVEDNLG-SIGNAKSRAVHNSVMELRNICNHPYL 1048


>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
            triphosphate hydrolases superfamily protein |
            chr2:12056771-12072950 FORWARD LENGTH=3529
          Length = 3529

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 17/156 (10%)

Query: 12   YIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLS----TFKDISDLTSVHDSP 67
            Y+   RLL+TGTP+QNNL ELWAL+ F +P++F + + F       F+   + ++     
Sbjct: 903  YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALL 962

Query: 68   KVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSIL 124
              ++ L I   L  VL  F+LRR K K        LP   E      L+  +   Y  +L
Sbjct: 963  SEEENLLIINRLHQVLRPFVLRRLKHKVEN----ELPEKIER-----LIRCEASAYQKLL 1013

Query: 125  RKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYL 160
             K +   L  S G +  +++HN V++LR  C+HPYL
Sbjct: 1014 MKRVEDNLG-SIGNAKSRAVHNSVMELRNICNHPYL 1048


>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
           | chr4:15431528-15438443 FORWARD LENGTH=1202
          Length = 1202

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 38/153 (24%)

Query: 18  LLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILR 77
           +L+TGTP+QNNL+EL+ALM+F     FG+L++    F+DI+           ++++  L 
Sbjct: 381 VLLTGTPLQNNLNELFALMHFLDADKFGSLEK----FQDINK----------EEQISRLH 426

Query: 78  SVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSG 137
            +L   +LRR K   ++     +PP  E  + V + S QK+VY +++             
Sbjct: 427 QMLAPHLLRRLKKDVLKDK---VPPKKELILRVDMSSQQKEVYKAVI------------- 470

Query: 138 TSNHQSL--------HNIVIQLRKACSHPYLFP 162
           T+N+Q L         N++++LR+ CSHPYL P
Sbjct: 471 TNNYQVLTKKRDAKISNVLMKLRQVCSHPYLLP 503


>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
           chr5:7565374-7570871 REVERSE LENGTH=1029
          Length = 1029

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 13  IMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDR 72
           +  RR  +TGTPIQNNL +L++L+ F     +GT   +       + L         +  
Sbjct: 593 VADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWW-------NKLVQKPFEEGDERG 645

Query: 73  LQILRSVLGAFMLRRTKSKHMECGN--LVLPPLTETTVFVPLVSLQKKVYVSILRK---E 127
           L++++S+L   MLRRTKS     G   LVLPP     ++  L   ++  Y ++ ++   +
Sbjct: 646 LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVK 705

Query: 128 LPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYL 160
             + +       N+ S+  ++++LR+ C HP+L
Sbjct: 706 FDQFVEQGKVLHNYASILELLLRLRQCCDHPFL 738


>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr2:523481-526884 FORWARD LENGTH=763
          Length = 763

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 25/157 (15%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQI 75
           +RL++TGTP+QN+L ELW+L+ F +P +F T +       D+  L +  D+    + +  
Sbjct: 378 QRLMLTGTPLQNDLHELWSLLEFMLPDIFTTENV------DLKKLLNAEDT----ELITR 427

Query: 76  LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRK----ELPKL 131
           ++S+LG F+LRR KS  M+     L P  +   +V +   Q+  Y   + +       +L
Sbjct: 428 MKSILGPFILRRLKSDVMQ----QLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARL 483

Query: 132 LSLSSGTSN-------HQSLHNIVIQLRKACSHPYLF 161
           + LSS + N        + + N   Q RK  +HP L 
Sbjct: 484 VKLSSKSLNSLAKALPKRQISNYFTQFRKIANHPLLI 520


>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
           chr2:8129154-8133502 FORWARD LENGTH=1187
          Length = 1187

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 16/151 (10%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFK-DISDLTSVHDSP-KVKDRLQ 74
           R++MTG PIQN L+ELW+L  F  P   G L  F + F   I+     + SP +V    +
Sbjct: 569 RIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYR 628

Query: 75  ---ILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSIL-RKELPK 130
              +LR ++  ++LRR K+      N  L   TE  +F  L   Q+  Y + L   E+ +
Sbjct: 629 CAVVLRDLIMPYLLRRMKADV----NAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQ 684

Query: 131 LLSLSSGTSNHQSLHNIVIQLRKACSHPYLF 161
           +        N  SL+ I + +RK C+HP L 
Sbjct: 685 IFD-----GNRNSLYGIDV-MRKICNHPDLL 709


>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
           chr5:25592160-25598405 REVERSE LENGTH=1090
          Length = 1090

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 14/152 (9%)

Query: 17  RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDI----SDLTSVHDSPKVKDR 72
           R++++GTPIQNNL ELWAL  F  P + G  + F   ++      +D  +     ++   
Sbjct: 539 RIIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNATDREQRIGST 598

Query: 73  L-QILRSVLGAFMLRRTKSKHM--ECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELP 129
           + + LR  +  F LRR KS+    +     L    E  V++ L + Q+++Y + L  E+ 
Sbjct: 599 VAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFLNSEI- 657

Query: 130 KLLSLSSGTSNHQSLHNIVIQLRKACSHPYLF 161
            +LS   G+     L  + I L+K C HP L 
Sbjct: 658 -VLSAFDGS----PLAALTI-LKKICDHPLLL 683


>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
            binding;ATP binding;nucleic acid
            binding;binding;helicases;ATP binding;DNA
            binding;helicases | chr3:20092361-20103807 FORWARD
            LENGTH=2045
          Length = 2045

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 35/172 (20%)

Query: 17   RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPK--VKD--- 71
            RL+++GTPIQNN+ ELW+L  F MP   GT  QF +++     L +  D PK   KD   
Sbjct: 1608 RLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYG--KPLLAARD-PKCSAKDAEA 1664

Query: 72   ---RLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTV---FVPLVSLQKKVYV---- 121
                ++ L   +  F+LRRTK +       VL  L E  +   +  L  +Q K+Y     
Sbjct: 1665 GVLAMEALHKQVMPFLLRRTKEE-------VLSDLPEKIIQDRYCDLSPVQLKLYEQFSG 1717

Query: 122  SILRKELPKLL----SLSSGTSN----HQSLH--NIVIQLRKACSHPYLFPG 163
            S  ++E+  ++    S  SG ++      S H    +  L K CSHP L  G
Sbjct: 1718 SSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVLG 1769


>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
            binding;binding;helicases;ATP binding;DNA
            binding;helicases | chr3:20092361-20104153 FORWARD
            LENGTH=2129
          Length = 2129

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 35/173 (20%)

Query: 17   RLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPK--VKD--- 71
            RL+++GTPIQNN+ ELW+L  F MP   GT  QF +++     L +  D PK   KD   
Sbjct: 1639 RLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYG--KPLLAARD-PKCSAKDAEA 1695

Query: 72   ---RLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTV---FVPLVSLQKKVYV---- 121
                ++ L   +  F+LRRTK +       VL  L E  +   +  L  +Q K+Y     
Sbjct: 1696 GVLAMEALHKQVMPFLLRRTKEE-------VLSDLPEKIIQDRYCDLSPVQLKLYEQFSG 1748

Query: 122  SILRKELPKLL----SLSSGTSN----HQSLH--NIVIQLRKACSHPYLFPGQ 164
            S  ++E+  ++    S  SG ++      S H    +  L K CSHP L  G 
Sbjct: 1749 SSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCSHPLLVLGD 1801


>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
           helicase domain-containing protein / zinc finger
           protein-related | chr1:22536293-22540610 REVERSE
           LENGTH=1022
          Length = 1022

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQI 75
           RR  ++GTPIQN++ +L++   F     + +   F ST K+      +  +P VK   Q 
Sbjct: 823 RRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKN-----PITRNP-VKG-YQK 875

Query: 76  LRSVLGAFMLRRTKSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSL 134
           L+++L   MLRRTK   ++   ++ LPP +     V     ++  Y  +  +   +    
Sbjct: 876 LQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREY 935

Query: 135 SSGTSNHQSLHNI---VIQLRKACSHPYLFPGQW 165
           +   +  Q+  NI   +++LR+AC HP L  G++
Sbjct: 936 AEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEY 969


>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
           helicase domain-containing protein / zinc finger
           protein-related | chr1:22535038-22540610 REVERSE
           LENGTH=1280
          Length = 1280

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQI 75
           RR  ++GTPIQN++ +L++   F     + +   F ST K+      +  +P VK   Q 
Sbjct: 816 RRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKN-----PITRNP-VKG-YQK 868

Query: 76  LRSVLGAFMLRRTKSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSL 134
           L+++L   MLRRTK   ++   ++ LPP +     V     ++  Y  +  +   +    
Sbjct: 869 LQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREY 928

Query: 135 SSGTSNHQSLHNI---VIQLRKACSHPYLFPGQW 165
           +   +  Q+  NI   +++LR+AC HP L  G++
Sbjct: 929 AEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEY 962


>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
           LENGTH=862
          Length = 862

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 10/124 (8%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPK-----VK 70
           +R+ +TGT +QN +SEL+ L  +  P   GT + F   + +   L     +P+       
Sbjct: 297 KRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIAD 356

Query: 71  DRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKELPK 130
            R Q L S+L  +MLRRTK + +  G+L++    +  VF  +  LQ++VY  ++  +LP+
Sbjct: 357 KRKQHLGSLLRKYMLRRTKEETI--GHLMMGK-EDNVVFCQMSQLQRRVYQRMI--QLPE 411

Query: 131 LLSL 134
           +  L
Sbjct: 412 IQCL 415


>AT1G50410.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr1:18672828-18677365 FORWARD LENGTH=981
          Length = 981

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQ- 74
           RR  ++GTPIQN + +L++   F     +     F    K           P  ++ LQ 
Sbjct: 500 RRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIK----------GPISRNSLQG 549

Query: 75  --ILRSVLGAFMLRRTKSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKL 131
              L++VL A MLRRTK   ++   ++ LPP T     V     ++  YV +      + 
Sbjct: 550 YKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQF 609

Query: 132 LSLSSGTSNHQSLHNI---VIQLRKACSHPYL 160
            + ++  + +Q+  NI   +++LR+AC HP L
Sbjct: 610 KAYAAAGTLNQNYANILLMLLRLRQACDHPQL 641


>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
           helicase domain-containing protein / zinc finger
           protein-related | chr1:22535038-22539756 REVERSE
           LENGTH=1122
          Length = 1122

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQI 75
           RR  ++GTPIQN++ +L++   F     + +   F ST K+      V          Q 
Sbjct: 658 RRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKG-------YQK 710

Query: 76  LRSVLGAFMLRRTKSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSL 134
           L+++L   MLRRTK   ++   ++ LPP +     V     ++  Y  +  +   +    
Sbjct: 711 LQAILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREY 770

Query: 135 SSGTSNHQSLHNI---VIQLRKACSHPYLFPGQW 165
           +   +  Q+  NI   +++LR+AC HP L  G++
Sbjct: 771 AEAGTVKQNYVNILLMLLRLRQACDHPLLVNGEY 804


>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
           chr3:6652799-6658876 REVERSE LENGTH=910
          Length = 910

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 19/155 (12%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD----ISDLTSVHDSPK-VK 70
           RR+L++GTP+QN+L E +A++ F  P   G    F   ++       + T+  +      
Sbjct: 345 RRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAA 404

Query: 71  DRLQILRSVLGAFMLRRTK---SKHMECGNLVLPPLTETTVFVPLVSLQKKVYVS-ILRK 126
           DR   L S +  F+LRRT    S H       LPP     V   + +LQ  +Y   I  K
Sbjct: 405 DRSAELSSKVNQFILRRTNALLSNH-------LPPKIIEVVCCKMTTLQSTLYNHFISSK 457

Query: 127 ELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLF 161
            L + L   +  +    +   +  L+K C+HP L 
Sbjct: 458 NLKRAL---ADNAKQTKVLAYITALKKLCNHPKLI 489


>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
            regulatory protein SNF2, putative |
            chr2:18923304-18931769 FORWARD LENGTH=2193
          Length = 2193

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 24/170 (14%)

Query: 10   DRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL----DQFLSTFKDISDLTSVHD 65
            DRY   RRLL+TGTP+QN+L ELW+L+   +P VF       D F   F+      ++ D
Sbjct: 1126 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIED 1185

Query: 66   ----SPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVY- 120
                + K    +  L  +L  FMLRR     +E     LP      +   + ++Q  VY 
Sbjct: 1186 DWLETEKKVIVIHRLHQILEPFMLRR----RVEDVEGSLPAKVSVVLRCRMSAIQSAVYD 1241

Query: 121  ----VSILRKELPKLLSLSSGTSN------HQSLHNIVIQLRKACSHPYL 160
                   LR + P    L +  +       +++L+N  ++LRKAC+HP L
Sbjct: 1242 WIKATGTLRVD-PDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLL 1290


>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
            regulatory protein SNF2, putative |
            chr2:18923304-18931769 FORWARD LENGTH=2192
          Length = 2192

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 24/170 (14%)

Query: 10   DRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL----DQFLSTFKDISDLTSVHD 65
            DRY   RRLL+TGTP+QN+L ELW+L+   +P VF       D F   F+      ++ D
Sbjct: 1125 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIED 1184

Query: 66   ----SPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVY- 120
                + K    +  L  +L  FMLRR     +E     LP      +   + ++Q  VY 
Sbjct: 1185 DWLETEKKVIVIHRLHQILEPFMLRR----RVEDVEGSLPAKVSVVLRCRMSAIQSAVYD 1240

Query: 121  ----VSILRKELPKLLSLSSGTSN------HQSLHNIVIQLRKACSHPYL 160
                   LR + P    L +  +       +++L+N  ++LRKAC+HP L
Sbjct: 1241 WIKATGTLRVD-PDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLL 1289


>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
           chr3:6652799-6658876 REVERSE LENGTH=908
          Length = 908

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 19/154 (12%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD----ISDLTSVHDSPK-VK 70
           RR+L++GTP+QN+L E +A++ F  P   G    F   ++       + T+  +      
Sbjct: 345 RRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAA 404

Query: 71  DRLQILRSVLGAFMLRRTK---SKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRKE 127
           DR   L S +  F+LRRT    S H       LPP     V   + +LQ   Y   L  +
Sbjct: 405 DRSAELSSKVNQFILRRTNALLSNH-------LPPKIIEVVCCKMTTLQ-TTYNGCLCMQ 456

Query: 128 LPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLF 161
           L + L   +  +    +   +  L+K C+HP L 
Sbjct: 457 LKRAL---ADNAKQTKVLAYITALKKLCNHPKLI 487


>AT3G20010.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr3:6971352-6976340 FORWARD LENGTH=1047
          Length = 1047

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQI 75
           RR  ++GTPIQN + +L++   F     +     F ST K      S     K       
Sbjct: 571 RRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYKK------- 623

Query: 76  LRSVLGAFMLRRTKSKHMECGNLV-LPP----LTETTVFVPLVSLQKKVYVSILRKELPK 130
           L++VL A MLRRTK   ++   ++ LPP    L++    V   S  KK+     R +   
Sbjct: 624 LQAVLRAIMLRRTKGTLLDGKPIINLPPKVVNLSQVDFSVAERSFYKKLEADS-RSQFKA 682

Query: 131 LLSLSSGTSNHQSLHNIVIQLRKACSHPYL 160
                + + N+ ++  ++++LR+AC HP L
Sbjct: 683 YADAGTLSQNYANILLLLLRLRQACDHPQL 712


>AT5G05130.1 | Symbols:  | DNA/RNA helicase protein |
           chr5:1512173-1514918 FORWARD LENGTH=862
          Length = 862

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 14/150 (9%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQI 75
           RR  +TGTPIQN   +L++LM F     F       S ++ +        + K   RLQ+
Sbjct: 441 RRWAVTGTPIQNGSFDLYSLMAFLRFEPFS----IKSYWQSLIQRPLGQGNKKGLSRLQV 496

Query: 76  LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSI---LRKELPKLL 132
           L   +    LRRTK K +    + LPP T  T +V L   ++++Y  +    +  +  L+
Sbjct: 497 L---MATISLRRTKEKSL----IGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLI 549

Query: 133 SLSSGTSNHQSLHNIVIQLRKACSHPYLFP 162
           +  S   N+ ++ +I+++LR+ C    L P
Sbjct: 550 NNGSLMRNYSTVLSIILRLRQLCDDMSLCP 579


>AT1G11100.2 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr1:3703934-3709302 REVERSE LENGTH=1269
          Length = 1269

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD-ISDLTSVHDSPKVKDRLQ 74
           RR  ++GTPIQN++++L++   F     + +   F  T K+ IS            +  +
Sbjct: 786 RRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPG--------EGYK 837

Query: 75  ILRSVLGAFMLRRTKSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLS 133
            L+++L   MLRRTK   ++   ++ LPP +     V     ++  Y  +      +   
Sbjct: 838 TLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKE 897

Query: 134 LSSGTSNHQSLHNI---VIQLRKACSHP 158
            +   +  Q+  NI   +++LR+AC HP
Sbjct: 898 YAEAGTVKQNYVNILLMLLRLRQACGHP 925


>AT1G11100.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           | chr1:3703934-3709302 REVERSE LENGTH=1226
          Length = 1226

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 16  RRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD-ISDLTSVHDSPKVKDRLQ 74
           RR  ++GTPIQN++++L++   F     + +   F  T K+ IS            +  +
Sbjct: 743 RRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPG--------EGYK 794

Query: 75  ILRSVLGAFMLRRTKSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLS 133
            L+++L   MLRRTK   ++   ++ LPP +     V     ++  Y  +      +   
Sbjct: 795 TLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKE 854

Query: 134 LSSGTSNHQSLHNI---VIQLRKACSHP 158
            +   +  Q+  NI   +++LR+AC HP
Sbjct: 855 YAEAGTVKQNYVNILLMLLRLRQACGHP 882