Miyakogusa Predicted Gene
- Lj0g3v0149049.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0149049.1 Non Chatacterized Hit- tr|B9MV09|B9MV09_POPTR
Putative uncharacterized protein CHR913 OS=Populus tri,77.38,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; seg,NULL;
HELICASE_ATP_BIND_1,Helicase, s,CUFF.9126.1
(339 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 446 e-126
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 437 e-123
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 207 8e-54
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 207 8e-54
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 203 2e-52
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 203 2e-52
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 203 2e-52
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 191 6e-49
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 186 1e-47
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 183 1e-46
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 183 1e-46
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 177 7e-45
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 175 4e-44
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 173 1e-43
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 170 1e-42
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 164 6e-41
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 164 7e-41
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 164 7e-41
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 161 6e-40
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 161 6e-40
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 150 1e-36
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 149 2e-36
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 132 4e-31
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 126 2e-29
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 124 1e-28
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 117 2e-26
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 117 2e-26
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 107 2e-23
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 92 4e-19
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 85 6e-17
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 81 1e-15
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 80 3e-15
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 75 9e-14
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 72 7e-13
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 67 3e-11
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 67 3e-11
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 67 3e-11
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 65 8e-11
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 64 2e-10
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 62 6e-10
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 61 1e-09
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 59 5e-09
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 59 5e-09
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 59 5e-09
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 58 7e-09
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 57 2e-08
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 53 3e-07
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 51 9e-07
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 446 bits (1148), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/335 (68%), Positives = 261/335 (77%), Gaps = 2/335 (0%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKTLQAISFLSYLK Q GPFLVLCPLSVTDGWVSEI +F P LEVL+YVGDK
Sbjct: 79 MGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYC 138
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
+R ++ HV ++SSK + LPFD+LLTTYDIAL+D+DFL+QIPWQYAIIDEAQRLKN
Sbjct: 139 RLDMRKSMYDHV-KKSSKGH-FLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKN 196
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
P+SVL+NVL +++++PRRLL+TGTPIQNNL+ELWALM+FCMP VFGTLDQFLS FK+ D
Sbjct: 197 PNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGD 256
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
S D K+ + L+ +LGAFMLRRTKS +E GNLVLPPLTE TV VPLVSLQKK+
Sbjct: 257 GLSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKI 316
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXXXXXHLVQAS 300
Y SILRKELP LL LSSG SNH SL NIVIQLRKACSHPYLF HLVQAS
Sbjct: 317 YTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEHLVQAS 376
Query: 301 GXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
G H SGHRVLLF+QMT TLDILQ+
Sbjct: 377 GKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQD 411
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/335 (67%), Positives = 254/335 (75%), Gaps = 11/335 (3%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKTLQAISFLSYLK Q GPFLVLCPLSVTDGWVSEI +F P LEVL+YVGDK
Sbjct: 79 MGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRYVGDKYC 138
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
+R ++ H LPFD+LLTTYDIAL+D+DFL+QIPWQYAIIDEAQRLKN
Sbjct: 139 RLDMRKSMYDH--------GHFLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKN 190
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
P+SVL+NVL +++++PRRLL+TGTPIQNNL+ELWALM+FCMP VFGTLDQFLS FK+ D
Sbjct: 191 PNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGD 250
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
V + K+ + L+ +LGAFMLRRTKS +E GNLVLPPLTE TV VPLVSLQKK+
Sbjct: 251 GLDVSND---KETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKI 307
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXXXXXHLVQAS 300
Y SILRKELP LL LSSG SNH SL NIVIQLRKACSHPYLF HLVQAS
Sbjct: 308 YTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPFEEGEHLVQAS 367
Query: 301 GXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
G H SGHRVLLF+QMT TLDILQ+
Sbjct: 368 GKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQD 402
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 207 bits (527), Expect = 8e-54, Method: Composition-based stats.
Identities = 127/339 (37%), Positives = 189/339 (55%), Gaps = 28/339 (8%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKTLQ IS L+YL Y+ GP +V+ P S W++EI +F P L +K++G+ E
Sbjct: 221 MGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEE 280
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R +R +L V FD+ +T++++A+ +K L + W+Y IIDEA R+KN
Sbjct: 281 RRHIR-----------EELLVAGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKN 329
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
+S+L ++ + RLL+TGTP+QNNL ELWAL+ F +P VF + + F F+
Sbjct: 330 ENSLLSKTMR-LFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQ---- 384
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
++ +D +V +Q L VL F+LRR KS +E G LPP ET + V + +QK+
Sbjct: 385 ISGENDQQEV---VQQLHKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQY 437
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFX-XXXXXXXXXXXHLVQA 299
Y ++L+K+ L + +G + L NI +QLRK C+HPYLF HLV
Sbjct: 438 YKALLQKD----LEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTN 493
Query: 300 SGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQERFL 338
+G RVL+F+QMT LDIL++ +
Sbjct: 494 AGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLM 532
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 207 bits (527), Expect = 8e-54, Method: Composition-based stats.
Identities = 127/339 (37%), Positives = 189/339 (55%), Gaps = 28/339 (8%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKTLQ IS L+YL Y+ GP +V+ P S W++EI +F P L +K++G+ E
Sbjct: 221 MGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEE 280
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R +R +L V FD+ +T++++A+ +K L + W+Y IIDEA R+KN
Sbjct: 281 RRHIR-----------EELLVAGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKN 329
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
+S+L ++ + RLL+TGTP+QNNL ELWAL+ F +P VF + + F F+
Sbjct: 330 ENSLLSKTMR-LFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQ---- 384
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
++ +D +V +Q L VL F+LRR KS +E G LPP ET + V + +QK+
Sbjct: 385 ISGENDQQEV---VQQLHKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQY 437
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFX-XXXXXXXXXXXHLVQA 299
Y ++L+K+ L + +G + L NI +QLRK C+HPYLF HLV
Sbjct: 438 YKALLQKD----LEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTN 493
Query: 300 SGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQERFL 338
+G RVL+F+QMT LDIL++ +
Sbjct: 494 AGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLM 532
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 203 bits (516), Expect = 2e-52, Method: Composition-based stats.
Identities = 124/339 (36%), Positives = 187/339 (55%), Gaps = 28/339 (8%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKTLQ IS L+YL Y+ GP +V+ P S W++EI +F P L +K++G+ E
Sbjct: 216 MGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEE 275
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R +R L V FD+ +T++++A+ +K L + W+Y IIDEA R+KN
Sbjct: 276 RRHIR-----------EDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKN 324
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
+S+L ++ + RLL+TGTP+QNNL ELWAL+ F +P +F + + F F+
Sbjct: 325 ENSLLSKTMR-LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ---- 379
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
++ +D +V +Q L VL F+LRR KS +E G LPP ET + V + +QK+
Sbjct: 380 ISGENDQQEV---VQQLHKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQY 432
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFX-XXXXXXXXXXXHLVQA 299
Y ++L+K+L + + + L NI +QLRK C+HPYLF HL+
Sbjct: 433 YKALLQKDLEAV----NAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITN 488
Query: 300 SGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQERFL 338
+G RVL+F+QMT LDIL++ +
Sbjct: 489 AGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM 527
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 203 bits (516), Expect = 2e-52, Method: Composition-based stats.
Identities = 124/339 (36%), Positives = 187/339 (55%), Gaps = 28/339 (8%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKTLQ IS L+YL Y+ GP +V+ P S W++EI +F P L +K++G+ E
Sbjct: 216 MGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEE 275
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R +R L V FD+ +T++++A+ +K L + W+Y IIDEA R+KN
Sbjct: 276 RRHIR-----------EDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKN 324
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
+S+L ++ + RLL+TGTP+QNNL ELWAL+ F +P +F + + F F+
Sbjct: 325 ENSLLSKTMR-LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ---- 379
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
++ +D +V +Q L VL F+LRR KS +E G LPP ET + V + +QK+
Sbjct: 380 ISGENDQQEV---VQQLHKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQY 432
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFX-XXXXXXXXXXXHLVQA 299
Y ++L+K+L + + + L NI +QLRK C+HPYLF HL+
Sbjct: 433 YKALLQKDLEAV----NAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITN 488
Query: 300 SGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQERFL 338
+G RVL+F+QMT LDIL++ +
Sbjct: 489 AGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM 527
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 203 bits (516), Expect = 2e-52, Method: Composition-based stats.
Identities = 124/339 (36%), Positives = 187/339 (55%), Gaps = 28/339 (8%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKTLQ IS L+YL Y+ GP +V+ P S W++EI +F P L +K++G+ E
Sbjct: 216 MGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEE 275
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R +R L V FD+ +T++++A+ +K L + W+Y IIDEA R+KN
Sbjct: 276 RRHIR-----------EDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKN 324
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
+S+L ++ + RLL+TGTP+QNNL ELWAL+ F +P +F + + F F+
Sbjct: 325 ENSLLSKTMR-LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ---- 379
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
++ +D +V +Q L VL F+LRR KS +E G LPP ET + V + +QK+
Sbjct: 380 ISGENDQQEV---VQQLHKVLRPFLLRRLKSD-VEKG---LPPKKETILKVGMSQMQKQY 432
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFX-XXXXXXXXXXXHLVQA 299
Y ++L+K+L + + + L NI +QLRK C+HPYLF HL+
Sbjct: 433 YKALLQKDLEAV----NAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITN 488
Query: 300 SGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQERFL 338
+G RVL+F+QMT LDIL++ +
Sbjct: 489 AGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM 527
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 191 bits (485), Expect = 6e-49, Method: Composition-based stats.
Identities = 121/346 (34%), Positives = 180/346 (52%), Gaps = 35/346 (10%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q++S L +L+ Q GPFLV+ PLS W E K+ P + ++ YVG
Sbjct: 652 MGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGT--- 708
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R+ R Q+ K+ + F+ LLTTY++ L DK L++I W Y ++DEA RLKN
Sbjct: 709 -RASREVCQQYEFYNEKKVGRPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKN 767
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDI-- 178
+ L+ L + + +LL+TGTP+QN++ ELWAL++F P F D+F+ +K++
Sbjct: 768 SEAQLYTALLE-FSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKNLSS 826
Query: 179 ---SDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVS 235
S+L ++H ++ R ILR V+ K +E LPP E + V +
Sbjct: 827 FNESELANLH----LELRPHILRRVI----------KDVEKS---LPPKIERILRVEMSP 869
Query: 236 LQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXX------XXXX 289
LQK+ Y IL + L G N SL NIV++L+K C+HP+LF
Sbjct: 870 LQKQYYKWILERNFHDLNKGVRG--NQVSLLNIVVELKKCCNHPFLFESADHGYGGDIND 927
Query: 290 XXXXXHLVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
++ +SG + HRVL+F+QM LDIL E
Sbjct: 928 NSKLDKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAE 973
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/338 (34%), Positives = 179/338 (52%), Gaps = 25/338 (7%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q IS ++YL + GP+L++ P +V WV+E + P + Y G E
Sbjct: 430 MGLGKTIQTISLIAYLLENKGVPGPYLIVAPKAVLPNWVNEFATWVPSIAAFLYDGRLEE 489
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
+++R KI F++L+T YD+ + DK FL +I W Y I+DE RLKN
Sbjct: 490 RKAIREKIAGEGK-----------FNVLITHYDLIMRDKAFLKKIEWYYMIVDEGHRLKN 538
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD-IS 179
S L L Y + RRLL+TGTPIQN+L ELW+L+ F +P +F ++ F F +
Sbjct: 539 HESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFA 598
Query: 180 DLTSVHDSPKVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSL 236
D +V S ++ L I L V+ F+LRR K + + LP T+ + + +
Sbjct: 599 DRGNV--SLTDEEELLIIHRLHHVIRPFILRRKKDEVEK----FLPGKTQVILKCDMSAW 652
Query: 237 QKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXXXXXHL 296
QK Y + ++ + + L +G+ +SL N+ +QLRK C+HPYLF +
Sbjct: 653 QKVYYKQVT--DMGR-VGLQTGSGKSKSLQNLTMQLRKCCNHPYLF-VGGDYNMWKKPEI 708
Query: 297 VQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQ 334
V+ASG +GHR+LLF+QMT +D+L+
Sbjct: 709 VRASGKFELLDRLLPKLRKAGHRILLFSQMTRLIDVLE 746
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 175/347 (50%), Gaps = 25/347 (7%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q I FLS+LK L GP+LV+ PLS W +EI +F P + + Y GDK
Sbjct: 229 MGLGKTIQTIGFLSHLKGNGLD-GPYLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQ 287
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMD-KDFLAQIPWQYAIIDEAQRLK 119
LR K H+ + V F +++T+Y++A+ D K L PW+Y +IDE RLK
Sbjct: 288 RDELRRK---HMPK-----TVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLK 339
Query: 120 NPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTF---- 175
N L LK M +LL+TGTP+QNNLSELW+L+ F +P +F + D+F S F
Sbjct: 340 NHKCKLLRELK-HLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSE 398
Query: 176 KDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECG-NLVLPPLTETTVFVPLV 234
K+ ++ T + + + L +L F+LRR M+C L LP E ++ +
Sbjct: 399 KNKNEATKEEEEKRRAQVVSKLHGILRPFILRR-----MKCDVELSLPRKKEIIMYATMT 453
Query: 235 SLQKKVYVSILRKELPKLLSLSS--GTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXXX 292
QKK ++ L L ++ G L+N+VIQLRK C+HP L
Sbjct: 454 DHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLVIQLRKNCNHPDLLQGQIDGSYLY 513
Query: 293 --XXHLVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQERF 337
+V G + H+VL+F+Q T LDI+ F
Sbjct: 514 PPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYF 560
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 171/339 (50%), Gaps = 28/339 (8%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q I+ ++YL + GP L+L P +V W +E +AP + Y G KE
Sbjct: 413 MGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSISAFLYDGSKEK 472
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
+R +I F++L+T YD+ + DK FL +I W Y I+DE RLKN
Sbjct: 473 RTEIRARI------------AGGKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKN 520
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
L L Y + RRLL+TGTPIQN+L ELW+L+ F +P +F ++ F F +
Sbjct: 521 HECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWF---NT 577
Query: 181 LTSVHDSPKVKDRLQI-----LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVS 235
+ S + D ++ L V+ F+LRR KS+ + LP T+ + + +
Sbjct: 578 PFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKSEVEK----FLPGKTQVILKCDMSA 633
Query: 236 LQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXXXXXH 295
QK Y + + L SG +SL N+ +QLRK C+HPYLF
Sbjct: 634 WQKLYYKQVTD---VGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLF-VGADYNMCKKPE 689
Query: 296 LVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQ 334
+V+ASG +GHR+LLF+QMT +D+L+
Sbjct: 690 IVRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLE 728
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 177 bits (450), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 162/287 (56%), Gaps = 16/287 (5%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+QA++FL++L + GPFLV+ P SV + W EI +F P L+ L Y G +
Sbjct: 613 MGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQE 672
Query: 61 GRSLRMKIH-QHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLK 119
LR I+ + + R+ + F +L+T+Y + + D+ + ++ WQY ++DEAQ +K
Sbjct: 673 RTILRKNINPKRMYRRDAG------FHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIK 726
Query: 120 NPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDIS 179
+ SS+ + L + RLL+TGTPIQNN++ELWAL++F MP +F DQF F
Sbjct: 727 SSSSIRWKTLLS-FNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGI 785
Query: 180 DLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKK 239
+ + H + +L L ++L FMLRR K + L TE TV L S Q+
Sbjct: 786 ENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVS----ELTTKTEVTVHCKLSSRQQA 841
Query: 240 VYVSILRK-ELPKLLSLSSGTSNHQ---SLHNIVIQLRKACSHPYLF 282
Y +I K L +L + G + +L NIVIQLRK C+HP LF
Sbjct: 842 FYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPELF 888
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 186/341 (54%), Gaps = 24/341 (7%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLG-PFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKE 59
MGLGKT+ A +FLS L ++ + P LVL PLS W+SE +AP L V++Y G +
Sbjct: 716 MGLGKTVSASAFLSSL-YFEFGVARPCLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAK 774
Query: 60 HGRSL--RMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQR 117
GR++ + H + ++K F++LLTTY++ L D L +PW+ ++DE R
Sbjct: 775 -GRAIIRDYEWHAKNSTGTTKKPTSYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHR 833
Query: 118 LKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD 177
LKN S LF++L + + R+L+TGTP+QNN+ E++ L+ F PS F +L F F
Sbjct: 834 LKNSESKLFSLL-NTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEERFH- 891
Query: 178 ISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQ 237
DLTS ++++ L+ ++ MLRR K M+ +PP TE V V L S+Q
Sbjct: 892 --DLTSA-------EKVEELKKLVAPHMLRRLKKDAMQN----IPPKTERMVPVELTSIQ 938
Query: 238 KKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXXXX---X 294
+ Y ++L K L ++ G + QS+ NIV+QLRK C+HPYL
Sbjct: 939 AEYYRAMLTKNYQILRNIGKGVA-QQSMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLHD 997
Query: 295 HLVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
++AS H GHRVL+F+QMT LDIL++
Sbjct: 998 MRIKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILED 1038
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 182/350 (52%), Gaps = 35/350 (10%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGD--- 57
MGLGKT+Q+I+ L+ L ++ +L P LV+ PLS W E +AP++ V+ Y G
Sbjct: 300 MGLGKTIQSIALLASL--FEENLIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQA 357
Query: 58 ----KEHGRSLRMKIHQHVTRQSSKLNV-----MLPFDLLLTTYDIALMDKDFLAQIPWQ 108
+EH L + ++S +++ + FD+LLT+Y++ +D L I W+
Sbjct: 358 RAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWE 417
Query: 109 YAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL 168
I+DE RLKN S LF+ L +Y R+L+TGTP+QNNL EL+ LM+F FG+L
Sbjct: 418 CMIVDEGHRLKNKDSKLFSSLT-QYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSL 476
Query: 169 DQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETT 228
++F FKDI+ ++++ L +L +LRR K M+ +PP E
Sbjct: 477 EEFQEEFKDINQ----------EEQISRLHKMLAPHLLRRVKKDVMK----DMPPKKELI 522
Query: 229 VFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXX-- 286
+ V L SLQK+ Y +I + ++L+ G SL+NI+++LRK C HPY+
Sbjct: 523 LRVDLSSLQKEYYKAIFTRNY-QVLTKKGGA--QISLNNIMMELRKVCCHPYMLEGVEPV 579
Query: 287 -XXXXXXXXHLVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
L+++ G GHRVL++ Q H LD+L++
Sbjct: 580 IHDANEAFKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLED 629
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 163/314 (51%), Gaps = 37/314 (11%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+QA++FL++L + GPFLV+ P SV + W EI +F P L+ L Y G +
Sbjct: 613 MGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQE 672
Query: 61 GRSLRMKIHQ----------------------------HVTRQSSKLNVMLPFDLLLTTY 92
LR I+ +V R + ++ F +L+T+Y
Sbjct: 673 RTILRKNINPKRVMFFSTWIISFDPWAVRQICICKRACNVVRFQTLSDMDAGFHILITSY 732
Query: 93 DIALMDKDFLAQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSE 152
+ + D+ + ++ WQY ++DEAQ +K+ SS+ + L + RLL+TGTPIQNN++E
Sbjct: 733 QLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLS-FNCRNRLLLTGTPIQNNMAE 791
Query: 153 LWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSK 212
LWAL++F MP +F DQF F + + H + +L L ++L FMLRR K
Sbjct: 792 LWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKD 851
Query: 213 HMECGNLVLPPLTETTVFVPLVSLQKKVYVSILRK-ELPKLLSLSSGTSNHQ---SLHNI 268
+ L TE TV L S Q+ Y +I K L +L + G + +L NI
Sbjct: 852 VVS----ELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNI 907
Query: 269 VIQLRKACSHPYLF 282
VIQLRK C+HP LF
Sbjct: 908 VIQLRKVCNHPELF 921
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 164 bits (416), Expect = 6e-41, Method: Composition-based stats.
Identities = 117/349 (33%), Positives = 170/349 (48%), Gaps = 36/349 (10%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q IS + YL + GPFLV+ P SV GW SEI +AP + + Y G +
Sbjct: 781 MGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDE 840
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIAL--MDKDFLAQIPWQYAIIDEAQRL 118
R L + + Q F++LLTTY+ + D+ L++I W Y IIDE R+
Sbjct: 841 RRKL---FKEQIVHQK--------FNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRI 889
Query: 119 KNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLS----T 174
KN S L LK Y+ RLL+TGTP+QNNL ELWAL+ F +P++F + + F
Sbjct: 890 KNASCKLNADLK-HYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKP 948
Query: 175 FKDISDLTSVHDSPKVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFV 231
F+ + ++ ++ L I L VL F+LRR K K LP E
Sbjct: 949 FQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN----ELPEKIER---- 1000
Query: 232 PLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXX 291
L+ + Y +L K + L S G + +++HN V++LR C+HPYL
Sbjct: 1001 -LIRCEASAYQKLLMKRVEDNLG-SIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNN 1058
Query: 292 XXXH-----LVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
+V+ G + HRVL F+ MT LD++++
Sbjct: 1059 IIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMED 1107
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 164 bits (416), Expect = 7e-41, Method: Composition-based stats.
Identities = 117/349 (33%), Positives = 170/349 (48%), Gaps = 36/349 (10%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q IS + YL + GPFLV+ P SV GW SEI +AP + + Y G +
Sbjct: 781 MGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDE 840
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIAL--MDKDFLAQIPWQYAIIDEAQRL 118
R L + + Q F++LLTTY+ + D+ L++I W Y IIDE R+
Sbjct: 841 RRKL---FKEQIVHQK--------FNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRI 889
Query: 119 KNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLS----T 174
KN S L LK Y+ RLL+TGTP+QNNL ELWAL+ F +P++F + + F
Sbjct: 890 KNASCKLNADLK-HYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKP 948
Query: 175 FKDISDLTSVHDSPKVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFV 231
F+ + ++ ++ L I L VL F+LRR K K LP E
Sbjct: 949 FQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN----ELPEKIER---- 1000
Query: 232 PLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXX 291
L+ + Y +L K + L S G + +++HN V++LR C+HPYL
Sbjct: 1001 -LIRCEASAYQKLLMKRVEDNLG-SIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNN 1058
Query: 292 XXXH-----LVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
+V+ G + HRVL F+ MT LD++++
Sbjct: 1059 IIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMED 1107
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 164 bits (416), Expect = 7e-41, Method: Composition-based stats.
Identities = 117/349 (33%), Positives = 170/349 (48%), Gaps = 36/349 (10%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q IS + YL + GPFLV+ P SV GW SEI +AP + + Y G +
Sbjct: 781 MGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDE 840
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIAL--MDKDFLAQIPWQYAIIDEAQRL 118
R L + + Q F++LLTTY+ + D+ L++I W Y IIDE R+
Sbjct: 841 RRKL---FKEQIVHQK--------FNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRI 889
Query: 119 KNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLS----T 174
KN S L LK Y+ RLL+TGTP+QNNL ELWAL+ F +P++F + + F
Sbjct: 890 KNASCKLNADLK-HYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKP 948
Query: 175 FKDISDLTSVHDSPKVKDRLQI---LRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFV 231
F+ + ++ ++ L I L VL F+LRR K K LP E
Sbjct: 949 FQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN----ELPEKIER---- 1000
Query: 232 PLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLFXXXXXXXXX 291
L+ + Y +L K + L S G + +++HN V++LR C+HPYL
Sbjct: 1001 -LIRCEASAYQKLLMKRVEDNLG-SIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNN 1058
Query: 292 XXXH-----LVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
+V+ G + HRVL F+ MT LD++++
Sbjct: 1059 IIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMED 1107
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 172/340 (50%), Gaps = 34/340 (10%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q+I+FL+ L ++ +L P LV+ PLS W E +AP + V+ Y GD E
Sbjct: 252 MGLGKTIQSIAFLASL--FEENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSE- 308
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R + + H+ + K FD+LLTTY++ L+ I W IIDE RLKN
Sbjct: 309 ARDVIWE-HEFYFSEGRKSK----FDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLKN 363
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
S L++ L ++ +L+TGTP+QNNL+EL+ALM+F FG+L++F K+
Sbjct: 364 QKSKLYSSLS-QFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQDINKE--- 419
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
+++ L +L +LRR K ++ +PP E + V + S QK+V
Sbjct: 420 -----------EQISRLHQMLAPHLLRRLKKDVLKDK---VPPKKELILRVDMSSQQKEV 465
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYL---FXXXXXXXXXXXXHLV 297
Y +++ L + N++++LR+ CSHPYL F L+
Sbjct: 466 YKAVITNNYQVLTKKRDA-----KISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLL 520
Query: 298 QASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQERF 337
+ASG GHRVL++ Q HTL +L++ F
Sbjct: 521 EASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYF 560
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 172/340 (50%), Gaps = 34/340 (10%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q+I+FL+ L ++ +L P LV+ PLS W E +AP + V+ Y GD E
Sbjct: 211 MGLGKTIQSIAFLASL--FEENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSE- 267
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R + + H+ + K FD+LLTTY++ L+ I W IIDE RLKN
Sbjct: 268 ARDVIWE-HEFYFSEGRKS----KFDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLKN 322
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISD 180
S L++ L ++ +L+TGTP+QNNL+EL+ALM+F FG+L++F K+
Sbjct: 323 QKSKLYSSLS-QFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQDINKE--- 378
Query: 181 LTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKV 240
+++ L +L +LRR K ++ +PP E + V + S QK+V
Sbjct: 379 -----------EQISRLHQMLAPHLLRRLKKDVLKDK---VPPKKELILRVDMSSQQKEV 424
Query: 241 YVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYL---FXXXXXXXXXXXXHLV 297
Y +++ L + N++++LR+ CSHPYL F L+
Sbjct: 425 YKAVITNNYQVLTKKRDA-----KISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLL 479
Query: 298 QASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQERF 337
+ASG GHRVL++ Q HTL +L++ F
Sbjct: 480 EASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYF 519
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 150 bits (380), Expect = 1e-36, Method: Composition-based stats.
Identities = 116/354 (32%), Positives = 178/354 (50%), Gaps = 39/354 (11%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q ++ ++YL ++ + GP L++ P +V W SE+ + P + + YVG K+
Sbjct: 1008 MGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQ 1067
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
R K+ V + F++L+TTY+ + D+ L+++ W+Y IIDEAQR+K+
Sbjct: 1068 ----RSKLFSQVKFEK--------FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1115
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL----DQFLSTFK 176
SVL L DRY RRLL+TGTP+QN+L ELW+L+ +P VF D F F+
Sbjct: 1116 RESVLARDL-DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQ 1174
Query: 177 DISDLTSVHD----SPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVP 232
++ D + K + L +L FMLRR +E LP +
Sbjct: 1175 KEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRR----RVEDVEGSLPAKVSVVLRCR 1230
Query: 233 LVSLQKKVY-----VSILRKELPKLLSLSSGTSN------HQSLHNIVIQLRKACSHPYL 281
+ ++Q VY LR + P L + + +++L+N ++LRKAC+HP L
Sbjct: 1231 MSAIQSAVYDWIKATGTLRVD-PDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLL 1289
Query: 282 FXXXXXXXXXXXXHLVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
LV++ G +GHRVLLF+ MT LDIL+E
Sbjct: 1290 --NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1341
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 149 bits (377), Expect = 2e-36, Method: Composition-based stats.
Identities = 116/354 (32%), Positives = 177/354 (50%), Gaps = 38/354 (10%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q ++ ++YL ++ + GP L++ P +V W SE+ + P + + YVG K+
Sbjct: 1008 MGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQ 1067
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLKN 120
L Q V + F++L+TTY+ + D+ L+++ W+Y IIDEAQR+K+
Sbjct: 1068 RSKL---FSQEV--------CAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1116
Query: 121 PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL----DQFLSTFK 176
SVL L DRY RRLL+TGTP+QN+L ELW+L+ +P VF D F F+
Sbjct: 1117 RESVLARDL-DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQ 1175
Query: 177 DISDLTSVHD----SPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVP 232
++ D + K + L +L FMLRR +E LP +
Sbjct: 1176 KEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRR----RVEDVEGSLPAKVSVVLRCR 1231
Query: 233 LVSLQKKVY-----VSILRKELPKLLSLSSGTSN------HQSLHNIVIQLRKACSHPYL 281
+ ++Q VY LR + P L + + +++L+N ++LRKAC+HP L
Sbjct: 1232 MSAIQSAVYDWIKATGTLRVD-PDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLL 1290
Query: 282 FXXXXXXXXXXXXHLVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHTLDILQE 335
LV++ G +GHRVLLF+ MT LDIL+E
Sbjct: 1291 --NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1342
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 154/285 (54%), Gaps = 25/285 (8%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+ I+ L++L + GP L++ P SV W +E +K+ P ++L Y G +
Sbjct: 563 MGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKE 622
Query: 61 GRSLRMKIHQHVTRQS-SKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQRLK 119
R L+ RQ KLN F + +TTY + + D + W+Y I+DEA +K
Sbjct: 623 -RKLK--------RQGWMKLNS---FHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIK 670
Query: 120 NPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD-I 178
N S + L + + RR+L+TGTP+QN+L ELW+LM+F MP VF + +F F + I
Sbjct: 671 NWKSQRWQTLLN-FNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPI 729
Query: 179 SDLTSVHDSPKV-KDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQ 237
+ + V K+ K+ + L +VL F+LRR K + +E LP E +F L Q
Sbjct: 730 AGM--VEGQEKINKEVIDRLHNVLRPFLLRRLK-RDVE---KQLPSKHEHVIFCRLSKRQ 783
Query: 238 KKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYLF 282
+ +Y + +L+SG+ + +I++QLRK C+HP LF
Sbjct: 784 RNLYEDFI-ASTETQATLTSGS--FFGMISIIMQLRKVCNHPDLF 825
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 172/370 (46%), Gaps = 48/370 (12%)
Query: 1 MGLGKTLQAISFLSYL---KVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPK--LEVL-KY 54
MGLGKT+Q +SFL L K+Y+ P +++CP+++ W E K+ P +E+L
Sbjct: 412 MGLGKTIQVLSFLGSLHFSKMYK----PSIIICPVTLLRQWRREAQKWYPDFHVEILHDS 467
Query: 55 VGDKEHGRSLRMKI-------------HQHVTRQSSKLNVML------PFDLLLTTYDIA 95
D HG+ H+ ++ + K + +L LL+TTY+
Sbjct: 468 AQDSGHGKGQGKASESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQL 527
Query: 96 LMDKDFLAQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWA 155
+ + L I W YA++DE R++NP+S + V K + R++MTG PIQN L+ELW+
Sbjct: 528 RLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTV-HRIIMTGAPIQNKLTELWS 586
Query: 156 LMYFCMPSVFGTLDQFLSTFK-DISDLTSVHDSP-KVKDRLQ---ILRSVLGAFMLRRTK 210
L F P G L F + F I+ + SP +V + +LR ++ ++LRR K
Sbjct: 587 LFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMK 646
Query: 211 SKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSIL-RKELPKLLSLSSGTSNHQSLHNIV 269
+ N L TE +F L Q+ Y + L E+ ++ N SL+ I
Sbjct: 647 ADV----NAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFD-----GNRNSLYGID 697
Query: 270 IQLRKACSHPYLFXXXXXXXXXXXXHLVQASGXXXXXXXXXXXXHYSGHRVLLFAQMTHT 329
+ +RK C+HP L + + SG GHRVLLF+Q
Sbjct: 698 V-MRKICNHPDLLEREHSHQNPDYGN-PERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQM 755
Query: 330 LDILQERFLI 339
LDIL E FL+
Sbjct: 756 LDIL-ESFLV 764
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 40/301 (13%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+QAI++L+ L GP LV+CP SV + W E+ K+ P VL+Y G
Sbjct: 241 MGLGKTIQAITYLTLLSRLNNDPGPHLVVCPASVLENWERELRKWCPSFTVLQYHGAARA 300
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDI-------ALMDKDFLAQIPWQYAIID 113
S + SK PF++LL Y + D+ L + W ++D
Sbjct: 301 AYSRELN-------SLSKAGKPPPFNVLLVCYSLFERHSEQQKDDRKVLKRWRWSCVLMD 353
Query: 114 EAQRLKNPSSVLF-NVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFL 172
EA LK+ +S + N++ +RL++TGTP+QN+L ELW+L+ F +P +F T +
Sbjct: 354 EAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFTTENV-- 411
Query: 173 STFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVP 232
D+ L + D+ + + ++S+LG F+LRR KS M+ L P + +V
Sbjct: 412 ----DLKKLLNAEDT----ELITRMKSILGPFILRRLKSDVMQ----QLVPKIQRVEYVL 459
Query: 233 LVSLQKKVYVSILRK----ELPKLLSLSSGTSN-------HQSLHNIVIQLRKACSHPYL 281
+ Q+ Y + + +L+ LSS + N + + N Q RK +HP L
Sbjct: 460 MERKQEDAYKEAIEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIANHPLL 519
Query: 282 F 282
Sbjct: 520 I 520
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 150/314 (47%), Gaps = 58/314 (18%)
Query: 1 MGLGKTLQAISFLSYLKVY------QLSLGPFLVLCPLSVTDGWVSEIVKFA--PKLEVL 52
MGLGKTLQA + ++ +L + P +++CP ++ W EI K+ L VL
Sbjct: 1509 MGLGKTLQASAIVASDAAERRGSTDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVL 1568
Query: 53 KYVGDKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAII 112
+YVG + SLR + + H ++++T+YD+ D D+L Q W Y I+
Sbjct: 1569 QYVGSAQDRVSLREQFNNH--------------NVIITSYDVVRKDVDYLTQFSWNYCIL 1614
Query: 113 DEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFL 172
DE +KN S + +K + RL+++GTPIQNN+ ELW+L F MP GT QF
Sbjct: 1615 DEGHIIKNAKSKITAAVK-QLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQ 1673
Query: 173 STFKDISDLTSVHDSPKVKDR--------LQILRSVLGAFMLRRTKSKHMECGNLVLPPL 224
+++ L + D PK + ++ L + F+LRRTK + VL L
Sbjct: 1674 ASYG--KPLLAARD-PKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEE-------VLSDL 1723
Query: 225 TETTV---FVPLVSLQKKVYV----SILRKELPKLL----SLSSGTSN----HQSLH--N 267
E + + L +Q K+Y S ++E+ ++ S SG ++ S H
Sbjct: 1724 PEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQ 1783
Query: 268 IVIQLRKACSHPYL 281
+ L K CSHP L
Sbjct: 1784 ALQYLLKLCSHPLL 1797
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 150/314 (47%), Gaps = 58/314 (18%)
Query: 1 MGLGKTLQAISFLSYLKVY------QLSLGPFLVLCPLSVTDGWVSEIVKFA--PKLEVL 52
MGLGKTLQA + ++ +L + P +++CP ++ W EI K+ L VL
Sbjct: 1478 MGLGKTLQASAIVASDAAERRGSTDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVL 1537
Query: 53 KYVGDKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAII 112
+YVG + SLR + + H ++++T+YD+ D D+L Q W Y I+
Sbjct: 1538 QYVGSAQDRVSLREQFNNH--------------NVIITSYDVVRKDVDYLTQFSWNYCIL 1583
Query: 113 DEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFL 172
DE +KN S + +K + RL+++GTPIQNN+ ELW+L F MP GT QF
Sbjct: 1584 DEGHIIKNAKSKITAAVK-QLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQ 1642
Query: 173 STFKDISDLTSVHDSPKVKDR--------LQILRSVLGAFMLRRTKSKHMECGNLVLPPL 224
+++ L + D PK + ++ L + F+LRRTK + VL L
Sbjct: 1643 ASYG--KPLLAARD-PKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEE-------VLSDL 1692
Query: 225 TETTV---FVPLVSLQKKVYV----SILRKELPKLL----SLSSGTSN----HQSLH--N 267
E + + L +Q K+Y S ++E+ ++ S SG ++ S H
Sbjct: 1693 PEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQ 1752
Query: 268 IVIQLRKACSHPYL 281
+ L K CSHP L
Sbjct: 1753 ALQYLLKLCSHPLL 1766
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 35/270 (12%)
Query: 1 MGLGKTLQAISFLS--YLK--------VYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLE 50
MGLGKT+Q I+FL+ Y K + + GP L++CP S+ W SE ++A +
Sbjct: 166 MGLGKTIQTIAFLAAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFK 225
Query: 51 VLKYVGDKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYA 110
V Y HG + M + + R ++L+T++D + L+ I W+
Sbjct: 226 VSVY-----HGSNRDMILEKLKAR---------GVEVLVTSFDTFRIQGPVLSGINWEIV 271
Query: 111 IIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQ 170
I DEA RLKN S L+ + +R+ +TGT +QN +SEL+ L + P GT +
Sbjct: 272 IADEAHRLKNEKSKLYEACLE-IKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREH 330
Query: 171 FLSTFKDISDLTSVHDSPK-----VKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPPLT 225
F + + L +P+ R Q L S+L +MLRRTK + + G+L++
Sbjct: 331 FRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETI--GHLMMGK-E 387
Query: 226 ETTVFVPLVSLQKKVYVSILRKELPKLLSL 255
+ VF + LQ++VY ++ +LP++ L
Sbjct: 388 DNVVFCQMSQLQRRVYQRMI--QLPEIQCL 415
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 136/303 (44%), Gaps = 44/303 (14%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEH 60
MGLGKT+Q SFL+ L +L + LV+ P ++ W+ E+ +Y G
Sbjct: 404 MGLGKTMQICSFLAGLFHSKL-IKRALVVAPKTLLPHWMKELATVGLSQMTREYYGTSTK 462
Query: 61 GRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIA------------LMDKDFLAQIPWQ 108
R + H+ + +LLTTYDI D+D W
Sbjct: 463 AREYDL---HHILQGKG---------ILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWD 510
Query: 109 YAIIDEAQRLKNPSSVLFNVLKDRYIMP--RRLLMTGTPIQNNLSELWALMYFCMPSVFG 166
Y I+DE +KNP++ L + +P R++++GTPIQNNL ELWAL F P + G
Sbjct: 511 YMILDEGHLIKNPNTQRAKSLLE---IPSSHRIIISGTPIQNNLKELWALFNFSCPGLLG 567
Query: 167 TLDQFLSTFKDI----SDLTSVHDSPKVKDRL-QILRSVLGAFMLRRTKSK--HMECGNL 219
+ F ++ +D + ++ + + LR + F LRR KS+ +
Sbjct: 568 DKNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATS 627
Query: 220 VLPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHP 279
L E V++ L + Q+++Y + L E+ +LS G+ L + I L+K C HP
Sbjct: 628 KLSKKDEIVVWLRLTACQRQLYEAFLNSEI--VLSAFDGS----PLAALTI-LKKICDHP 680
Query: 280 YLF 282
L
Sbjct: 681 LLL 683
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 42/294 (14%)
Query: 7 LQAISFLSYLK--VYQLSL---GPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEHG 61
++A FL + K + Q S+ G L++CP+++ W +EI + H
Sbjct: 468 VKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEI---------------EMHA 512
Query: 62 RSLRMKIHQHVTRQSSKLNVMLP-FDLLLTTYDI--------ALMDKDFLAQIPWQYAII 112
+ + ++ H + K +L D+++TTY + D + + + W ++
Sbjct: 513 KPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVL 572
Query: 113 DEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFL 172
DEA +KN S + ++ + RR +TGTPIQNNL +L++L+ F +GT +
Sbjct: 573 DEAHTIKNSKSQI-SLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWW- 630
Query: 173 STFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGN--LVLPPLTETTVF 230
+ L + L++++S+L MLRRTKS G LVLPP ++
Sbjct: 631 ------NKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIY 684
Query: 231 VPLVSLQKKVYVSILRK---ELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPYL 281
L ++ Y ++ ++ + + + N+ S+ ++++LR+ C HP+L
Sbjct: 685 CELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFL 738
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 125/303 (41%), Gaps = 47/303 (15%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPF----LVLCPLSVTDGWVSEIVKFAPKLEVLKYVG 56
MGLGKTLQ+I+ L L P +++ P S+ W +EI K +VG
Sbjct: 213 MGLGKTLQSITLLYTLLCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKK---------WVG 263
Query: 57 DK-------EHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALM-DKDFLAQIPWQ 108
D+ E R + TR S L V L+ +Y+ M F
Sbjct: 264 DRIQLIALCESTRDDVLSGIDSFTRPRSALQV------LIISYETFRMHSSKFCQSESCD 317
Query: 109 YAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL 168
I DEA RLKN ++ L RR+L++GTP+QN+L E +A++ F P G
Sbjct: 318 LLICDEAHRLKNDQTLTNRALAS-LTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDA 376
Query: 169 DQFLSTFKD----ISDLTSVHDSPK-VKDRLQILRSVLGAFMLRRTK---SKHMECGNLV 220
F ++ + T+ + DR L S + F+LRRT S H
Sbjct: 377 AHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNH------- 429
Query: 221 LPPLTETTVFVPLVSLQKKVYVS-ILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHP 279
LPP V + +LQ +Y I K L + L + + + + L+K C+HP
Sbjct: 430 LPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRAL---ADNAKQTKVLAYITALKKLCNHP 486
Query: 280 YLF 282
L
Sbjct: 487 KLI 489
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 124/302 (41%), Gaps = 47/302 (15%)
Query: 1 MGLGKTLQAISFLSYLKVYQLSLGPF----LVLCPLSVTDGWVSEIVKFAPKLEVLKYVG 56
MGLGKTLQ+I+ L L P +++ P S+ W +EI K +VG
Sbjct: 213 MGLGKTLQSITLLYTLLCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKK---------WVG 263
Query: 57 DK-------EHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALM-DKDFLAQIPWQ 108
D+ E R + TR S L V L+ +Y+ M F
Sbjct: 264 DRIQLIALCESTRDDVLSGIDSFTRPRSALQV------LIISYETFRMHSSKFCQSESCD 317
Query: 109 YAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL 168
I DEA RLKN ++ L RR+L++GTP+QN+L E +A++ F P G
Sbjct: 318 LLICDEAHRLKNDQTLTNRALAS-LTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDA 376
Query: 169 DQFLSTFKD----ISDLTSVHDSPK-VKDRLQILRSVLGAFMLRRTK---SKHMECGNLV 220
F ++ + T+ + DR L S + F+LRRT S H
Sbjct: 377 AHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNH------- 429
Query: 221 LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLRKACSHPY 280
LPP V + +LQ Y L +L + L + + + + L+K C+HP
Sbjct: 430 LPPKIIEVVCCKMTTLQ-TTYNGCLCMQLKRAL---ADNAKQTKVLAYITALKKLCNHPK 485
Query: 281 LF 282
L
Sbjct: 486 LI 487
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 126/258 (48%), Gaps = 35/258 (13%)
Query: 27 LVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEHGRSLRMKIHQ-HVTRQSSKLNVMLPF 85
L++CP SV W++++ +EH +K++ H ++ +N ++ +
Sbjct: 342 LIVCPPSVISAWITQL---------------EEHTVPGILKVYMYHGGERTDDVNELMKY 386
Query: 86 DLLLTTYDIALMDKDF----LAQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLM 141
D++LTTY +++ + + ++ W I+DEA +KN ++ V+ + RR +
Sbjct: 387 DIVLTTYGTLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVC-KLKASRRWAV 445
Query: 142 TGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVL 201
TGTPIQN +L++LM F F S ++ + + K RLQ+L +
Sbjct: 446 TGTPIQNGSFDLYSLMAFLRFEPF----SIKSYWQSLIQRPLGQGNKKGLSRLQVL---M 498
Query: 202 GAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSI---LRKELPKLLSLSSG 258
LRRTK K + + LPP T T +V L ++++Y + + + L++ S
Sbjct: 499 ATISLRRTKEKSL----IGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSL 554
Query: 259 TSNHQSLHNIVIQLRKAC 276
N+ ++ +I+++LR+ C
Sbjct: 555 MRNYSTVLSIILRLRQLC 572
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 48/274 (17%)
Query: 27 LVLCPLSVTDGWVSEI---VKFAPKLEVLKYVGDKEHGRSLRMKIHQHVTRQSSKLNVML 83
L++CP S+ W E+ V L VL Y HG S H+ +
Sbjct: 636 LIVCPTSLMRQWADELRKKVTLEAHLSVLVY-----HGCSRTKDPHE-----------LA 679
Query: 84 PFDLLLTTYDIALMDKDF-----------LAQIPWQYAIIDEAQRLKN---PSSVLFNVL 129
+D+++TTY + K LAQ+ W ++DEAQ +KN +S+ + L
Sbjct: 680 KYDVVITTYSLVSKRKHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGL 739
Query: 130 KDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPK 189
+ RR ++GTPIQN++++L++ F + + F T K+ + P
Sbjct: 740 HAK----RRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKN-----PISSYP- 789
Query: 190 VKDRLQILRSVLGAFMLRRTKSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKE 248
+ + L+++L MLRRTK ++ ++ LPP + V ++ Y +
Sbjct: 790 -GEGYKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDS 848
Query: 249 LPKLLSLSSGTSNHQSLHNI---VIQLRKACSHP 279
+ + + Q+ NI +++LR+AC HP
Sbjct: 849 RDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHP 882
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 35/299 (11%)
Query: 1 MGLGKTLQAISFL-SYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAP-KLEVLK--YVG 56
MGLGKT Q I+FL + ++ L L L++ P++V W SE K+ P +++ L+ +G
Sbjct: 756 MGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLG 815
Query: 57 DKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYA------ 110
D R + +T+ K V L + KD A A
Sbjct: 816 DVSRERRFDL-----LTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPD 870
Query: 111 --IIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL 168
+ DEA +KN + LK + RR+ +TG+P+QNNL E + ++ F G+
Sbjct: 871 ILVCDEAHIIKNTKADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 929
Query: 169 DQFLSTFKDISD----LTSVHDSPKVKD-RLQILRSVLGAFMLRRTKSKHMECGNLVLPP 223
+F + F++ + + S + K+ + R IL L F+ R M LPP
Sbjct: 930 PEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMD----MNVVKKDLPP 985
Query: 224 LTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQ---LRKACSHP 279
T + V L LQ+ +Y L +L S G ++ + N L + +HP
Sbjct: 986 KTVFVISVKLSPLQRILYQRFL-----ELYGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 35/299 (11%)
Query: 1 MGLGKTLQAISFL-SYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAP-KLEVLK--YVG 56
MGLGKT Q I+FL + ++ L L L++ P++V W SE K+ P +++ L+ +G
Sbjct: 756 MGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLG 815
Query: 57 DKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYA------ 110
D R + +T+ K V L + KD A A
Sbjct: 816 DVSRERRFDL-----LTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPD 870
Query: 111 --IIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL 168
+ DEA +KN + LK + RR+ +TG+P+QNNL E + ++ F G+
Sbjct: 871 ILVCDEAHIIKNTKADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 929
Query: 169 DQFLSTFKDISD----LTSVHDSPKVKD-RLQILRSVLGAFMLRRTKSKHMECGNLVLPP 223
+F + F++ + + S + K+ + R IL L F+ R M LPP
Sbjct: 930 PEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMD----MNVVKKDLPP 985
Query: 224 LTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQ---LRKACSHP 279
T + V L LQ+ +Y L +L S G ++ + N L + +HP
Sbjct: 986 KTVFVISVKLSPLQRILYQRFL-----ELYGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 35/299 (11%)
Query: 1 MGLGKTLQAISFL-SYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAP-KLEVLK--YVG 56
MGLGKT Q I+FL + ++ L L L++ P++V W SE K+ P +++ L+ +G
Sbjct: 756 MGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLG 815
Query: 57 DKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYA------ 110
D R + +T+ K V L + KD A A
Sbjct: 816 DVSRERRFDL-----LTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPD 870
Query: 111 --IIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTL 168
+ DEA +KN + LK + RR+ +TG+P+QNNL E + ++ F G+
Sbjct: 871 ILVCDEAHIIKNTKADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 929
Query: 169 DQFLSTFKDISD----LTSVHDSPKVKD-RLQILRSVLGAFMLRRTKSKHMECGNLVLPP 223
+F + F++ + + S + K+ + R IL L F+ R M LPP
Sbjct: 930 PEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMD----MNVVKKDLPP 985
Query: 224 LTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQ---LRKACSHP 279
T + V L LQ+ +Y L +L S G ++ + N L + +HP
Sbjct: 986 KTVFVISVKLSPLQRILYQRFL-----ELYGFSDGRTDERMRKNFFAAYQVLAQILNHP 1039
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 18/196 (9%)
Query: 93 DIALMDKDFLAQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSE 152
D + D LA++ W ++DEAQ +KN + + RR ++GTPIQN + +
Sbjct: 457 DSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCG-LRAKRRWCLSGTPIQNTIDD 515
Query: 153 LWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQ---ILRSVLGAFMLRRT 209
L++ F + F K P ++ LQ L++VL A MLRRT
Sbjct: 516 LYSYFRFLKYDPYAVYKSFCHQIK----------GPISRNSLQGYKKLQAVLRAIMLRRT 565
Query: 210 KSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNI 268
K ++ ++ LPP T V ++ YV + + + ++ + +Q+ NI
Sbjct: 566 KGTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYANI 625
Query: 269 ---VIQLRKACSHPYL 281
+++LR+AC HP L
Sbjct: 626 LLMLLRLRQACDHPQL 641
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 79/290 (27%), Positives = 126/290 (43%), Gaps = 38/290 (13%)
Query: 1 MGLGKTLQAISFL-SYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKE 59
MGLGKT Q I+FL + ++ L L L++ P++V W SE K+ P EV
Sbjct: 756 MGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPS-EV-------- 806
Query: 60 HGRSLRMKIHQHVTRQS--SKLNVMLPFDLLLTTYDIALMDKDFLAQIPWQYAIIDEAQR 117
+ LR+ + V+R + N DL + A + L P + DEA
Sbjct: 807 --KPLRIFMLGDVSRYKFFYERNFWGVKDL-----NAARGICNALRDGP-DILVCDEAHI 858
Query: 118 LKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKD 177
+KN + LK + RR+ +TG+P+QNNL E + ++ F G+ +F + F++
Sbjct: 859 IKNTKADTTQALK-QVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQN 917
Query: 178 ISD----LTSVHDSPKVKD-RLQILRSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVP 232
+ + S + K+ + R IL L F+ R M LPP T + V
Sbjct: 918 PIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMD----MNVVKKDLPPKTVFVISVK 973
Query: 233 LVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQ---LRKACSHP 279
L LQ+ +Y L +L S G ++ + N L + +HP
Sbjct: 974 LSPLQRILYQRFL-----ELYGFSDGRTDERMRKNFFAAYQVLAQILNHP 1018
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 32/234 (13%)
Query: 2 GLGKTLQAISFLSYLKVYQLSL---------GPFLVLCPLSVTDGWVSEI---VKFAPKL 49
GLGKT+ IS + K+ S G L++CP SV W E+ V KL
Sbjct: 84 GLGKTISTISLILLQKLKSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKL 143
Query: 50 EVLKYVGDKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMDKDF-------- 101
VL + G + I+ V + + +P + +L YD +
Sbjct: 144 SVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQP 203
Query: 102 ----LAQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALM 157
L ++ W ++DEA +KN +++ RR +TGTPI+N + +L++
Sbjct: 204 HVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFS-LRAKRRWCLTGTPIKNKVDDLYSYF 262
Query: 158 YFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKS 211
F + + F K D +H K L+++L MLRRTK
Sbjct: 263 RFLRYHPYAMCNSFHQRIKAPIDKKPLHGYKK-------LQAILRGIMLRRTKE 309
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 102 LAQIPWQYAIIDEAQRLKN---PSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMY 158
LAQ+ W ++DEAQ +KN +S+ + L + RR ++GTPIQN++++L++
Sbjct: 752 LAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAK----RRWCLSGTPIQNSIADLYSYFR 807
Query: 159 FCMPSVFGTLDQFLSTFKD-ISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECG 217
F + + F T K+ IS + + L+++L MLRRTK ++
Sbjct: 808 FLKYDPYSSYQTFCETIKNPISSYPG--------EGYKTLQAILKKVMLRRTKDTLLDGK 859
Query: 218 NLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNI---VIQLR 273
++ LPP + V ++ Y + + + + Q+ NI +++LR
Sbjct: 860 PVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLR 919
Query: 274 KACSHP 279
+AC HP
Sbjct: 920 QACGHP 925
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 122/317 (38%), Gaps = 89/317 (28%)
Query: 27 LVLCPLSVTDGWVSEI---VKFAPKLEVLKYVGDKEHGRSLRMKIHQHVTRQSSKLNVML 83
LV+CP SV W E+ V L VL Y HG S H+ +
Sbjct: 510 LVVCPTSVMRQWADELHKKVTSEANLSVLVY-----HGSSRTKDPHE-----------LA 553
Query: 84 PFDLLLTTYDIALM---------DKDF--------------------------------- 101
+D+++TT+ I M D+D
Sbjct: 554 KYDVVVTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSK 613
Query: 102 ----------LAQIPWQYAIIDEAQRLKNPSSVLFNV---LKDRYIMPRRLLMTGTPIQN 148
LA++ W ++DEAQ +KN + + L+ + RR ++GTPIQN
Sbjct: 614 KKKVEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAK----RRWCLSGTPIQN 669
Query: 149 NLSELWALMYFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRR 208
++ +L++ F + + F ST K+ V Q L+++L MLRR
Sbjct: 670 SIDDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKG-------YQKLQAILKTVMLRR 722
Query: 209 TKSKHMECGNLV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHN 267
TK ++ ++ LPP + V ++ Y + + + + + Q+ N
Sbjct: 723 TKGSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVN 782
Query: 268 I---VIQLRKACSHPYL 281
I +++LR+AC HP L
Sbjct: 783 ILLMLLRLRQACDHPLL 799
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 102 LAQIPWQYAIIDEAQRLKNPSSVLFNV---LKDRYIMPRRLLMTGTPIQNNLSELWALMY 158
LA++ W ++DEAQ +KN + + L+ + RR ++GTPIQN++ +L++
Sbjct: 789 LAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAK----RRWCLSGTPIQNSIDDLYSYFR 844
Query: 159 FCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGN 218
F + + F ST K+ V Q L+++L MLRRTK ++
Sbjct: 845 FLKYDPYSSYVLFCSTIKNPITRNPVKG-------YQKLQAILKTVMLRRTKGSLLDGKP 897
Query: 219 LV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNI---VIQLRK 274
++ LPP + V ++ Y + + + + + Q+ NI +++LR+
Sbjct: 898 IISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQ 957
Query: 275 ACSHPYL 281
AC HP L
Sbjct: 958 ACDHPLL 964
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 102 LAQIPWQYAIIDEAQRLKNPSSVLFNV---LKDRYIMPRRLLMTGTPIQNNLSELWALMY 158
LA++ W ++DEAQ +KN + + L+ + RR ++GTPIQN++ +L++
Sbjct: 782 LAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAK----RRWCLSGTPIQNSIDDLYSYFR 837
Query: 159 FCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGN 218
F + + F ST K+ V Q L+++L MLRRTK ++
Sbjct: 838 FLKYDPYSSYVLFCSTIKNPITRNPVKG-------YQKLQAILKTVMLRRTKGSLLDGKP 890
Query: 219 LV-LPPLTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNI---VIQLRK 274
++ LPP + V ++ Y + + + + + Q+ NI +++LR+
Sbjct: 891 IISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLRQ 950
Query: 275 ACSHPYL 281
AC HP L
Sbjct: 951 ACDHPLL 957
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 102 LAQIPWQYAIIDEAQRLKNPSSVLFN---VLKDRYIMPRRLLMTGTPIQNNLSELWALMY 158
L ++ W ++DEAQ +KN + + L+ + RR ++GTPIQN + +L++
Sbjct: 537 LGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAK----RRWCLSGTPIQNTIDDLYSYFR 592
Query: 159 FCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGN 218
F + F ST K S K L++VL A MLRRTK ++
Sbjct: 593 FLRYDPYAVYKSFYSTIKVPISRNSCQGYKK-------LQAVLRAIMLRRTKGTLLDGKP 645
Query: 219 LV-LPP----LTETTVFVPLVSLQKKVYVSILRKELPKLLSLSSGTSNHQSLHNIVIQLR 273
++ LPP L++ V S KK+ R + + + N+ ++ ++++LR
Sbjct: 646 IINLPPKVVNLSQVDFSVAERSFYKKLEADS-RSQFKAYADAGTLSQNYANILLLLLRLR 704
Query: 274 KACSHPYL 281
+AC HP L
Sbjct: 705 QACDHPQL 712
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 139/323 (43%), Gaps = 87/323 (26%)
Query: 1 MGLGKTLQAISF-LSYLKVYQL----SLGPFLVLCPLSVTDGWVSEIVKFAP--KLEVLK 53
MG+GKT+QAIS L+ +V + ++G LVL P W+ EI + VL+
Sbjct: 162 MGMGKTIQAISLVLARREVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQ 221
Query: 54 YVGDKEHGRSLRMKIHQHVTRQSSKLNVMLPFDLLLTTYDIALMD--KDF--------LA 103
Y H ++ + ++ +D +LTT I + KD L
Sbjct: 222 Y----------------HGPKRDKNVQKLMNYDFVLTTSPIVENEYRKDEGVDETMSPLH 265
Query: 104 QIPWQYAIIDEAQRLKNPSS----VLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYF 159
I W I+DEA +KN SS +F L+ Y R ++GTP+QN++ EL++L+ +
Sbjct: 266 SIKWNRIIVDEAHDIKNRSSRTAKAVF-ALEATY----RWALSGTPLQNDVDELYSLVSY 320
Query: 160 CMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGN- 218
L+ F ST+ + H + R+V F++ GN
Sbjct: 321 SF------LNFFYSTYASFA-FRHTH--------ITFARNVTVKFLI---------GGNI 356
Query: 219 --LVLPPLTETTVFVPLVSL------QKKVYVSILRKELPKLL----------SLSSGT- 259
L +P E V ++ + +++ +S++ + + L + +GT
Sbjct: 357 LPLSIPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTL 416
Query: 260 -SNHQSLHNIVIQLRKACSHPYL 281
+N+ + ++I+LR+A HPYL
Sbjct: 417 MNNYAHIFGLLIRLRQAVDHPYL 439
>AT2G40770.1 | Symbols: | zinc ion binding;DNA
binding;helicases;ATP binding;nucleic acid binding |
chr2:17013535-17021315 REVERSE LENGTH=1664
Length = 1664
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 122/317 (38%), Gaps = 60/317 (18%)
Query: 8 QAISFLSYLKVYQLSLGPFLVLCPLSVTDGWVSEIVKFAPKLEVLKYVGDKEHGRSLRMK 67
Q S L + +S G L++CP + W SEI + ++ + + SL +
Sbjct: 484 QMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEE 543
Query: 68 IHQHVTRQSSKLNVMLPFDLLLTTYDIALMD--KDF----------------------LA 103
+T +L D++LTTYD+ D DF L
Sbjct: 544 PMIDITE-------LLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLT 596
Query: 104 QIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPS 163
+I W +DEAQ +++ ++ + R R +TGTPIQ L +L+ L+ F +
Sbjct: 597 RIFWWRICLDEAQMVESNAAAATEMAL-RLYTKHRWCITGTPIQRKLDDLFGLLKFLKAN 655
Query: 164 VFGTLDQFLSTFKDISDLTSVHDSPKVKDRLQILRSVLGAFMLRRTKSKHMECGNLVLPP 223
F ++ +D + ++ M R +K H+ L LPP
Sbjct: 656 PFDVSRWWIEVIRDPYERRDTK-------AMEFTHKFFKQVMWRSSKV-HV-ADELQLPP 706
Query: 224 LTETTVFVPLVSLQKKVY--------------VSILRKELPKLLSLSSGT-----SNHQS 264
E ++ ++++ Y + L++++ K SS +
Sbjct: 707 QEECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAK 766
Query: 265 LHNIVIQLRKACSHPYL 281
L N +++LR+AC HP +
Sbjct: 767 LLNSLLKLRQACCHPQV 783
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 42/219 (19%)
Query: 98 DKDFLAQIPWQYAIIDEA----QRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSEL 153
+K L + W I+DEA +R N + +F L+ Y R ++GTP+QN + EL
Sbjct: 345 EKSLLHSVKWNRIILDEAHYIKERRSNTARAVF-ALEATY----RWALSGTPLQNRVGEL 399
Query: 154 WALM----------YFCMPSVFGTLD----------------QFLSTFKDISDLTSVHDS 187
++L+ YFC LD F K ++ +V+ S
Sbjct: 400 YSLIRFLQIRPYSYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPITVYGS 459
Query: 188 PKVKDRLQIL--RSVLGAFMLRRTKSKHMECGNLVLPPLTETTVFVPLVSLQKKVYVSIL 245
+ R IL VL +LRRTK +L LPP T L + Y S+
Sbjct: 460 FGLGKRAMILLKHKVLKDILLRRTKLGRA--ADLALPPRIITLRRDTLDVKEFDYYESLY 517
Query: 246 RKELPKLLS-LSSGT--SNHQSLHNIVIQLRKACSHPYL 281
+ + + + +GT +N+ + +++ +LR+A HPYL
Sbjct: 518 KNSQAEFNTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYL 556