Miyakogusa Predicted Gene

Lj0g3v0147879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0147879.1 Non Chatacterized Hit- tr|J3MB50|J3MB50_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB06G1,56.04,2e-19,Ran
BP2/NZF zinc finger-like,NULL; ZF_RANBP2_1,Zinc finger, RanBP2-type;
seg,NULL; ZF_RANBP2_2,Zinc ,GO025651.path2.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15680.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...   106   3e-24
AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...    94   3e-20
AT2G26695.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...    74   1e-14

>AT3G15680.1 | Symbols:  | Ran BP2/NZF zinc finger-like
          superfamily protein | chr3:5315437-5316048 FORWARD
          LENGTH=164
          Length = 164

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 57/93 (61%), Gaps = 3/93 (3%)

Query: 1  MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXX---XXXXXV 57
          MSRPGDWNCRSC HLNFQRRDSCQRCGDS+                             V
Sbjct: 1  MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 58 RPGDWYCAAANCGAHNFASRSSCFKCGAFKDDL 90
          RPGDWYC   NCG HNFASRS+CFKCG FKD+ 
Sbjct: 61 RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDET 93


>AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like
          superfamily protein | chr5:8876639-8877339 FORWARD
          LENGTH=170
          Length = 170

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 1  MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXX--XXXXXVR 58
          M+RPGDWNCR C HLNFQRRDSCQRC + +                            VR
Sbjct: 1  MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 59 PGDWYCAAANCGAHNFASRSSCFKCGAFKDDL 90
          PGDWYC   +CG HNFA+RSSCFKCGA KD+ 
Sbjct: 61 PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEF 92


>AT2G26695.1 | Symbols:  | Ran BP2/NZF zinc finger-like
          superfamily protein | chr2:11365275-11365789 FORWARD
          LENGTH=138
          Length = 138

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 5  GDWNCRSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPGDWYC 64
          GDW C +CQH NF++R+SCQ+CG  K+                         V  GDWYC
Sbjct: 6  GDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTE-----------VMAGDWYC 54

Query: 65 AAANCGAHNFASRSSCFKCGAFKDDLV 91
           A NCG+HN+ASR+SC++CG  K +  
Sbjct: 55 GALNCGSHNYASRTSCYRCGMIKVEYT 81



 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 5   GDWNC--RSCQHLNFQRRDSCQRCGDSKYXXXXXXXXXXXXXXXXXXXXXXXXXVRPGDW 62
           GDW C   +C   N+  R SC RCG  K                           + GDW
Sbjct: 50  GDWYCGALNCGSHNYASRTSCYRCGMIK-VEYTEQYYGAQMVAYGNDGAACPPGWKTGDW 108

Query: 63  YCAAANCGAHNFASRSSCFKCGAFKD 88
            C    CG HN+ASR+ CFKC   +D
Sbjct: 109 VCPRVGCGVHNYASRAECFKCKTTRD 134