Miyakogusa Predicted Gene

Lj0g3v0147759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0147759.1 tr|Q0J184|Q0J184_ORYSJ Os09g0457400 protein
OS=Oryza sativa subsp. japonica GN=Os09g0457400 PE=2
SV=,55.29,3e-19,seg,NULL; no description,Glycoside hydrolase,
catalytic domain; ALPHA-AMYLASE,NULL; ALPHA-AMYLASE,Gl,CUFF.9033.1
         (188 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 | chr...   248   2e-66
AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 | chr...    87   5e-18
AT4G25000.1 | Symbols: ATAMY1, AMY1 | alpha-amylase-like | chr4:...    81   4e-16

>AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 |
           chr1:26288518-26293003 REVERSE LENGTH=887
          Length = 887

 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 140/184 (76%), Gaps = 9/184 (4%)

Query: 5   EKAGEEESTSAFTDGIINEISHLVTDIXXXXXXXXXXXXAQERILQEIERLAAEAYSIFR 64
            K  +E S S FT  II EI +L  DI             QE ILQEIE+LAAEAYSIFR
Sbjct: 405 RKTDKEVSASGFTKEIITEIRNLAIDISSHKNQKTNVKEVQENILQEIEKLAAEAYSIFR 464

Query: 65  SSVPTFSEETIMESEVSVEPTKLILPDTPLKVSSGTGTGYEILCQGFNWESHKSGRWYLE 124
           S+ P FSEE ++E+E          PD  +K+SSGTG+G+EILCQGFNWES+KSGRWYLE
Sbjct: 465 STTPAFSEEGVLEAEADK-------PD--IKISSGTGSGFEILCQGFNWESNKSGRWYLE 515

Query: 125 LKEKAAELMSLGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDVVKKFHEVGI 184
           L+EKA EL SLGFTV+WLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKD VKKFH+VGI
Sbjct: 516 LQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDTVKKFHKVGI 575

Query: 185 KVLG 188
           KVLG
Sbjct: 576 KVLG 579


>AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 |
           chr1:28561647-28563914 FORWARD LENGTH=413
          Length = 413

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 103 GYEILCQGFNWESHKSGRWYLELKEKAAELMSLGFTVIWLPPPTESVSPEGYMPKDLYNL 162
           G E++ Q +NWESHK   W+  L  K  ++   GFT  WLPPP++S++PEGY+P+DLY+L
Sbjct: 24  GREVILQAYNWESHKYD-WWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQDLYSL 82

Query: 163 NSRYGTIDELKDVVKKFHEVGIKVL 187
           NS YG+   LK +++K  +  ++ +
Sbjct: 83  NSAYGSEHLLKSLLRKMKQYKVRAM 107


>AT4G25000.1 | Symbols: ATAMY1, AMY1 | alpha-amylase-like |
           chr4:12852109-12853825 REVERSE LENGTH=423
          Length = 423

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 2/84 (2%)

Query: 106 ILCQGFNWES-HKSGRWYLELKEKAAELMSLGFTVIWLPPPTESVSPEGYMPKDLYNLN- 163
           +L Q FNWES  K G +Y  L     ++ + G T +WLPPP++SV+PEGY+P  LY+LN 
Sbjct: 27  LLFQSFNWESWKKEGGFYNSLHNSIDDIANAGITHLWLPPPSQSVAPEGYLPGKLYDLNS 86

Query: 164 SRYGTIDELKDVVKKFHEVGIKVL 187
           S+YG+  ELK ++K  ++ GIK L
Sbjct: 87  SKYGSEAELKSLIKALNQKGIKAL 110