Miyakogusa Predicted Gene

Lj0g3v0147699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0147699.1 tr|F2CQW9|F2CQW9_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,47.87,9e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; DUF1421,Protein of unknown function
DUF14,NODE_31384_length_703_cov_162.046936.path2.1
         (217 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28300.1 | Symbols:  | Protein of unknown function (DUF1421) ...   250   5e-67
AT4G28300.2 | Symbols:  | Protein of unknown function (DUF1421) ...   184   3e-47
AT5G14540.1 | Symbols:  | Protein of unknown function (DUF1421) ...    80   9e-16
AT3G01560.1 | Symbols:  | Protein of unknown function (DUF1421) ...    72   2e-13

>AT4G28300.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr4:14014860-14016823 FORWARD LENGTH=496
          Length = 496

 Score =  250 bits (638), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 117/178 (65%), Positives = 144/178 (80%), Gaps = 7/178 (3%)

Query: 1   MASGPSGLSNCSSKGFDFRSDDVLCSYEDFTEQDSSNGNNIDPS-------KDFHISRMT 53
           MASG SG  N  SKGFDF SDD+LCSY+D+T QDSSNG + DP+       K+FH +RM 
Sbjct: 1   MASGSSGRVNSGSKGFDFGSDDILCSYDDYTNQDSSNGPHSDPAIAASNSNKEFHKTRMA 60

Query: 54  KAAALPATAYGSPEGSLGQDVIATVEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKS 113
           +++  P ++Y  PE SL QD+  TVE+++K Y+DN+MRFLEG+ SRLSQLELYCYNLDK+
Sbjct: 61  RSSVFPTSSYSPPEDSLSQDITDTVERTMKMYADNMMRFLEGLSSRLSQLELYCYNLDKT 120

Query: 114 IGEMRSDLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELAKLQLVQKE 171
           IGEMRS+L   HE+AD KL+S++KH+QEVHRSVQIL+DKQELAD QKELAKLQLVQKE
Sbjct: 121 IGEMRSELTHAHEDADVKLRSLDKHLQEVHRSVQILRDKQELADTQKELAKLQLVQKE 178


>AT4G28300.2 | Symbols:  | Protein of unknown function (DUF1421) |
           chr4:14015414-14016823 FORWARD LENGTH=438
          Length = 438

 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 103/120 (85%)

Query: 52  MTKAAALPATAYGSPEGSLGQDVIATVEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLD 111
           M +++  P ++Y  PE SL QD+  TVE+++K Y+DN+MRFLEG+ SRLSQLELYCYNLD
Sbjct: 1   MARSSVFPTSSYSPPEDSLSQDITDTVERTMKMYADNMMRFLEGLSSRLSQLELYCYNLD 60

Query: 112 KSIGEMRSDLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELAKLQLVQKE 171
           K+IGEMRS+L   HE+AD KL+S++KH+QEVHRSVQIL+DKQELAD QKELAKLQLVQKE
Sbjct: 61  KTIGEMRSELTHAHEDADVKLRSLDKHLQEVHRSVQILRDKQELADTQKELAKLQLVQKE 120


>AT5G14540.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr5:4687333-4689624 REVERSE LENGTH=547
          Length = 547

 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 65/94 (69%)

Query: 74  VIATVEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKSIGEMRSDLNSDHEEADSKLK 133
           +I+ +++++K ++D L+  +EG+ +RL+QLE    +L+  + +++  + + H + D KL+
Sbjct: 126 IISAIDRTMKAHADKLLHVMEGVSARLTQLETRTRDLENLVDDVKVSVGNSHGKTDGKLR 185

Query: 134 SIEKHVQEVHRSVQILKDKQELADAQKELAKLQL 167
            +E  + EV   VQ+LKDKQE+ +AQ +L+KLQL
Sbjct: 186 QLENIMLEVQNGVQLLKDKQEIVEAQLQLSKLQL 219


>AT3G01560.1 | Symbols:  | Protein of unknown function (DUF1421) |
           chr3:219884-221707 FORWARD LENGTH=511
          Length = 511

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 44/169 (26%)

Query: 41  IDPSKDFHISRMTKAAAL----------------------------PATAYGS-----PE 67
           I PS DFH  R T AA L                            P T +GS     P 
Sbjct: 55  IVPSYDFHPIRPTTAARLSHSALDLAGSTTRVNWSASDYKPVSTTSPNTNFGSLDSIEPS 114

Query: 68  GSL---GQDVIAT------VEKSIKTYSDNLMRFLEGIGSRLSQLELYCYNLDKSIGEMR 118
             +   GQ+V  T      +++++K ++D L+  +EG+ +RLSQLE   +NL+  + +++
Sbjct: 115 KLVPDKGQNVFNTTIMSEIIDRTMKKHTDTLLHVMEGVSARLSQLETRTHNLENLVDDLK 174

Query: 119 SDLNSDHEEADSKLKSIEKHVQEVHRSVQILKDKQELADAQKELAKLQL 167
             +++ H   D K++ ++  + EV   VQ+LKDKQE+ +AQ  L+K Q+
Sbjct: 175 VSVDNSHGSTDGKMRQLKNILVEVQSGVQLLKDKQEILEAQ--LSKHQV 221