Miyakogusa Predicted Gene

Lj0g3v0147489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0147489.1 Non Chatacterized Hit- tr|D8S2F2|D8S2F2_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,64.29,0.0000000000006,seg,NULL; UNCHARACTERIZED,Protein of
unknown function DUF543; DUF543,Protein of unknown function
DUF,CUFF.9009.1
         (97 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72170.1 | Symbols:  | Domain of unknown function (DUF543) | ...   130   2e-31
AT1G22520.1 | Symbols:  | Domain of unknown function (DUF543) | ...   119   5e-28
AT1G22520.2 | Symbols:  | Domain of unknown function (DUF543) | ...   119   5e-28

>AT1G72170.1 | Symbols:  | Domain of unknown function (DUF543) |
           chr1:27156403-27157516 FORWARD LENGTH=102
          Length = 102

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 77/101 (76%), Gaps = 6/101 (5%)

Query: 1   MADNKEIIPPQYDLDAKWDACLDLTVRRFVYSSFAGALGGLLFFRSPVTRWASIAFGAGV 60
           MA+ K+ +PP+YD++AKWDACLDLTVRRFVYSS  GA  GLLFFRSPVTRWASIA GAG+
Sbjct: 1   MAEKKDSVPPEYDVNAKWDACLDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASIALGAGI 60

Query: 61  GIGSAYTESSRLFDGPPR---KLALPE--VSET-PIQSVQD 95
           GIGSAY++ SR FD P      LA P+  ++ET P+    D
Sbjct: 61  GIGSAYSDCSRAFDSPSSSSANLAAPKNNITETSPVSQAAD 101


>AT1G22520.1 | Symbols:  | Domain of unknown function (DUF543) |
          chr1:7953299-7954304 REVERSE LENGTH=99
          Length = 99

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 66/89 (74%), Gaps = 4/89 (4%)

Query: 11 QYDLDAKWDACLDLTVRRFVYSSFAGALGGLLFFRSPVTRWASIAFGAGVGIGSAYTESS 70
          + D++AKWDACLDLT RRFVYSS  GA  GLLFFRSPVTRWASIAFGAG+GIGSAYT+ S
Sbjct: 10 ESDVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCS 69

Query: 71 RLFDGPPRK----LALPEVSETPIQSVQD 95
          R+FD         LA P+ +ET +    +
Sbjct: 70 RVFDASSSTSATLLAAPKSTETSVSQAAE 98


>AT1G22520.2 | Symbols:  | Domain of unknown function (DUF543) |
          chr1:7952996-7954304 REVERSE LENGTH=179
          Length = 179

 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 65/85 (76%), Gaps = 4/85 (4%)

Query: 13 DLDAKWDACLDLTVRRFVYSSFAGALGGLLFFRSPVTRWASIAFGAGVGIGSAYTESSRL 72
          D++AKWDACLDLT RRFVYSS  GA  GLLFFRSPVTRWASIAFGAG+GIGSAYT+ SR+
Sbjct: 12 DVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCSRV 71

Query: 73 FDGPPRK----LALPEVSETPIQSV 93
          FD         LA P+ +ET +  V
Sbjct: 72 FDASSSTSATLLAAPKSTETSVSQV 96