Miyakogusa Predicted Gene

Lj0g3v0147459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0147459.1 Non Chatacterized Hit- tr|H0ZJ82|H0ZJ82_TAEGU
Uncharacterized protein OS=Taeniopygia guttata
GN=LRRC,44.83,3e-18,seg,NULL; no description,NULL; LRR_4,Leucine rich
repeat 4; L domain-like,NULL; LEUCINE-RICH REPEAT-,CUFF.9003.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15410.1 | Symbols:  | Leucine-rich repeat (LRR) family prote...   100   3e-22
AT3G15410.2 | Symbols:  | Leucine-rich repeat (LRR) family prote...    93   3e-20

>AT3G15410.1 | Symbols:  | Leucine-rich repeat (LRR) family protein
           | chr3:5203380-5207279 FORWARD LENGTH=584
          Length = 584

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 64/109 (58%)

Query: 1   MDRVLKAAXXXXXXXXXXXXXXEVPDEVYRNLEGLGSDDKWWEAAELQKLVLAHNCIESL 60
           MDR+LKAA              +VP EVY+ LE  G  + WWEA +LQKL+LAHN IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDIKNLPFXXXXXXXXXXXXXXPAAIGELPQLKMLDVSFNSIVRIPDE 109
           +ED+KNL                PAAIGEL  +K LDVSFNSI  +P++
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQ 109


>AT3G15410.2 | Symbols:  | Leucine-rich repeat (LRR) family protein
           | chr3:5203380-5207279 FORWARD LENGTH=590
          Length = 590

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 64/115 (55%), Gaps = 6/115 (5%)

Query: 1   MDRVLKAAXXXXXXXXXXXXXX------EVPDEVYRNLEGLGSDDKWWEAAELQKLVLAH 54
           MDR+LKAA                    +VP EVY+ LE  G  + WWEA +LQKL+LAH
Sbjct: 1   MDRILKAARTSGSLNLSNRSLNFDPITWDVPTEVYQCLETTGEGENWWEAVDLQKLILAH 60

Query: 55  NCIESLKEDIKNLPFXXXXXXXXXXXXXXPAAIGELPQLKMLDVSFNSIVRIPDE 109
           N IE L+ED+KNL                PAAIGEL  +K LDVSFNSI  +P++
Sbjct: 61  NDIEVLREDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQ 115